Subcellular Localization
min:
: max
Winner_takes_all: golgi, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G286100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 97.88 | 97.88 |
| TraesCS4A01G018000.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 97.66 | 97.66 |
| HORVU4Hr1G074960.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 94.48 | 94.88 |
| EER92792 | Sorghum | endoplasmic reticulum, golgi | 84.5 | 86.9 |
| Os03t0169000-01 | Rice | endoplasmic reticulum, golgi, vacuole | 84.08 | 84.98 |
| Zm00001d048323_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 82.38 | 84.72 |
| Zm00001d027842_P003 | Maize | endoplasmic reticulum, golgi, plasma membrane | 81.95 | 71.09 |
| PGSC0003DMT400072871 | Potato | cytosol, extracellular | 57.11 | 69.15 |
| Solyc01g010930.2.1 | Tomato | cytosol, extracellular | 39.07 | 68.91 |
| CDY04145 | Canola | cytosol | 49.89 | 64.03 |
| GSMUA_Achr8P16870_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 65.18 | 62.78 |
| Solyc05g013140.2.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 65.61 | 61.43 |
| AT1G14020.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 64.33 | 60.72 |
| CDY62211 | Canola | cytosol, endoplasmic reticulum, peroxisome, plastid | 63.91 | 60.32 |
| KRH50557 | Soybean | cytosol | 63.91 | 60.32 |
| CDX96871 | Canola | cytosol, endoplasmic reticulum, nucleus, plastid | 63.69 | 60.24 |
| Bra016714.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus, plastid | 63.69 | 60.24 |
| KRH70785 | Soybean | cytosol, nucleus, vacuole | 63.06 | 58.7 |
| KRH74924 | Soybean | cytosol | 63.06 | 58.7 |
| KRG89556 | Soybean | mitochondrion, plastid | 44.59 | 58.33 |
| CDY64492 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 58.81 | 58.19 |
| TraesCS3D01G095400.1 | Wheat | mitochondrion | 59.24 | 56.94 |
| TraesCS4D01G175500.2 | Wheat | mitochondrion, plastid | 59.66 | 56.43 |
| AT2G03280.2 | Thale cress | cytosol, endoplasmic reticulum, golgi | 60.51 | 56.1 |
| TraesCS5D01G259500.1 | Wheat | golgi | 59.02 | 55.27 |
| CDY36425 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 52.65 | 53.8 |
| TraesCS7D01G215200.1 | Wheat | mitochondrion, plastid | 55.41 | 52.3 |
| TraesCS6D01G268600.1 | Wheat | mitochondrion | 54.99 | 52.01 |
| Bra017390.1-P | Field mustard | nucleus | 58.17 | 40.23 |
| TraesCS2D01G352800.1 | Wheat | mitochondrion | 41.61 | 40.16 |
| TraesCS7D01G178800.1 | Wheat | golgi | 42.25 | 37.69 |
| TraesCS3D01G358900.2 | Wheat | plastid | 41.19 | 35.14 |
| TraesCS2D01G410600.1 | Wheat | plastid | 36.31 | 33.79 |
| TraesCS5D01G215300.3 | Wheat | nucleus, plasma membrane, plastid | 42.25 | 31.64 |
| TraesCS1D01G279000.1 | Wheat | plastid | 37.16 | 30.7 |
| TraesCS2D01G401900.1 | Wheat | golgi | 36.31 | 29.84 |
| TraesCS5D01G353700.1 | Wheat | golgi | 35.88 | 29.14 |
| TraesCS7D01G276100.1 | Wheat | golgi | 36.52 | 28.67 |
| TraesCS2D01G316700.1 | Wheat | nucleus, plastid | 7.43 | 26.32 |
| TraesCS7D01G158900.1 | Wheat | nucleus, plastid | 7.43 | 25.74 |
| TraesCS7D01G159300.1 | Wheat | nucleus, plastid | 7.43 | 25.74 |
| TraesCS7D01G061900.1 | Wheat | nucleus, plastid | 7.43 | 25.74 |
| TraesCS7D01G061500.1 | Wheat | nucleus, plastid | 7.43 | 25.74 |
| TraesCS7D01G432000.1 | Wheat | nucleus, plastid | 7.43 | 25.74 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G284800.1 | EnsemblPlantsGene:TraesCS4D01G284800 | InterPro:FucosylTrfase_pln | InterPro:GDP-Fuc_O-FucTrfase | PANTHER:PTHR31741 | PANTHER:PTHR31741:SF3 |
| PFAM:PF10250 | PIRSF:PIRSF009360 | SEG:seg | SignalP:SignalP-TM | TIGR:cd11299 | TMHMM:TMhelix |
| MapMan:21.3.2.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:455746172..455749006
Molecular Weight (calculated)
53501.8 Da
IEP (calculated)
9.670
GRAVY (calculated)
-0.313
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSRPRFWL VAGCVALLLW ASVAQLVAVG RLLALFGLAG GAPGPSPPPC SPPPPPPPPR IYKSNGYLKI SCNGGLNQMR SEICDMVAVA RLLNLTMVVP
101: ELDKRSFWAD QSNFGDIFDV RHFITSLRDE VRIVKRLPKR FSPTDSSTTL DMSPVSWSDE KYYLHQISPL FSKYKVIHFN KTDARLANNG ISTELQLVRC
201: RVNFHALKFT PQIEALGNKL VQKLRDKGSF VALHLRYEMD MLAFSGCNHG LNPEEAEELK RMRYAYPWWR DKEIDSKTKR SEGLCPLTPE ETSLVLKALG
301: FEKDTLIYIA AGEIYGGEKR LKPLRAAFPK LVRKEMLLDS EPLRQFQNHS SQMAALDFIV STASDVFLPT FDGNMAKLVE GHRRFLGFRK SVLPDRRKLV
401: ELIDLYNNKT ISWENFTFSV QEVHRGRVVQ PSCRRKLENK PKEEDYFYAN PHECLANSSL CSGSKDTVTV R
101: ELDKRSFWAD QSNFGDIFDV RHFITSLRDE VRIVKRLPKR FSPTDSSTTL DMSPVSWSDE KYYLHQISPL FSKYKVIHFN KTDARLANNG ISTELQLVRC
201: RVNFHALKFT PQIEALGNKL VQKLRDKGSF VALHLRYEMD MLAFSGCNHG LNPEEAEELK RMRYAYPWWR DKEIDSKTKR SEGLCPLTPE ETSLVLKALG
301: FEKDTLIYIA AGEIYGGEKR LKPLRAAFPK LVRKEMLLDS EPLRQFQNHS SQMAALDFIV STASDVFLPT FDGNMAKLVE GHRRFLGFRK SVLPDRRKLV
401: ELIDLYNNKT ISWENFTFSV QEVHRGRVVQ PSCRRKLENK PKEEDYFYAN PHECLANSSL CSGSKDTVTV R
001: MSVVVGDRSE STLMRSDYKA PPSQAIPKAR LQVWFFRVCS CILVWTCLIQ LFWHSQIFTG LTNHISRFSL PVQSVPLPPP LPPRNYTSNG ILLVSCNGGL
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTRYMFV SHVNDPTRFV CSLKHSFVSS FYSDFEDIFD IKHFIDSLRD EVRIIRRLPK RYSKKYGFKL
201: FEMPPVSWSN DKYYLQQVLP RFSKRKVIHF VRSDTRLANN GLSLDLQRLR CRVNFQGLRF TPRIEALGSK LVRILQQRGS FVALHLRYEM DMLAFSGCTH
301: GCTDEEAEEL KKMRYAYPWW REKEIVSEER RVQGLCPLTP EEAVLVLKAL GFQKDTQIYI AAGEIFGGAK RLALLKESFP RIVKKEMLLD PTELQQFQNH
401: SSQMAALDFI VSVASNTFIP TYYGNMAKVV EGHRRYLGFK KTILLDRKRL VELLDLHNNK TLSWDQFAVA VKDAHQGRRM GEPTHRKVIS VRPKEEDYFY
501: ANPQECIS
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTRYMFV SHVNDPTRFV CSLKHSFVSS FYSDFEDIFD IKHFIDSLRD EVRIIRRLPK RYSKKYGFKL
201: FEMPPVSWSN DKYYLQQVLP RFSKRKVIHF VRSDTRLANN GLSLDLQRLR CRVNFQGLRF TPRIEALGSK LVRILQQRGS FVALHLRYEM DMLAFSGCTH
301: GCTDEEAEEL KKMRYAYPWW REKEIVSEER RVQGLCPLTP EEAVLVLKAL GFQKDTQIYI AAGEIFGGAK RLALLKESFP RIVKKEMLLD PTELQQFQNH
401: SSQMAALDFI VSVASNTFIP TYYGNMAKVV EGHRRYLGFK KTILLDRKRL VELLDLHNNK TLSWDQFAVA VKDAHQGRRM GEPTHRKVIS VRPKEEDYFY
501: ANPQECIS
Arabidopsis Description
SUBAcon: [cytosol,golgi,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.