CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36313	Soybean	cytosol, mitochondrion	98.09	88.86
PGSC0003DMT400034411	Potato	cytosol	33.88	87.94
Solyc12g098820.1.1	Tomato	cytosol, nucleus	86.07	87.02
VIT_05s0124g00360.t01	Wine grape	cytosol	89.34	81.55
GSMUA_Achr3P21520_001	Banana	cytosol	81.69	81.03
GSMUA_Achr8P32140_001	Banana	cytosol	74.59	80.77
GSMUA_Achr11P...	Banana	cytosol	81.15	80.27
GSMUA_AchrUn_...	Banana	cytosol	81.42	79.89
CDX67793	Canola	cytosol	79.78	79.78
GSMUA_AchrUn_...	Banana	cytosol	79.51	79.08
PGSC0003DMT400011695	Potato	cytosol	85.79	77.92
KXG36001	Sorghum	cytosol, mitochondrion	77.6	77.81
HORVU5Hr1G078180.3	Barley	cytosol	77.05	77.47
TraesCS5A01G297900.1	Wheat	cytosol	77.05	77.47
TraesCS5B01G296900.1	Wheat	cytosol	77.05	77.47
KXG25484	Sorghum	cytosol	76.23	77.29
TraesCS5D01G304700.1	Wheat	cytosol	76.78	77.2
Os01t0899000-01	Rice	plasma membrane	77.6	76.96
Zm00001d021136_P001	Maize	mitochondrion	76.23	76.65
Os09t0513600-01	Rice	plasma membrane	51.09	76.64
OQU88043	Sorghum	cytosol	69.4	76.05
EER98423	Sorghum	cytosol	76.23	76.02
Os03t0844100-01	Rice	plasma membrane	76.23	75.82
TraesCS7B01G164600.1	Wheat	cytosol	74.86	75.69
TraesCS4A01G341700.1	Wheat	cytosol	75.96	75.54
TraesCS5D01G531200.1	Wheat	cytosol	75.96	75.54
TraesCS7A01G267400.1	Wheat	cytosol	74.32	75.35
TraesCS7D01G267300.1	Wheat	cytosol	74.32	75.35
TraesCS5B01G532900.1	Wheat	cytosol	75.14	75.34
CDY57492	Canola	cytosol	82.24	75.25
Bra007444.1-P	Field mustard	cytosol	82.51	75.12
CDY06011	Canola	cytosol	82.51	74.94
HORVU3Hr1G089260.1	Barley	cytosol	75.14	74.53
TraesCS3D01G389800.1	Wheat	cytosol	74.59	74.39
CDX98366	Canola	cytosol	79.23	74.36
TraesCS3B01G427900.1	Wheat	cytosol	74.86	74.25
Bra014542.1-P	Field mustard	cytosol	82.24	73.96
CDY00615	Canola	cytosol	81.97	73.71
CDX89020	Canola	cytosol	81.97	73.71
AT3G59350.6	Thale cress	plasma membrane	84.15	72.81
HORVU6Hr1G043760.1	Barley	cytosol, nucleus	15.3	72.73
CDX79833	Canola	cytosol	81.15	72.09
CDY17940	Canola	cytosol	80.87	72.02
Bra037729.1-P	Field mustard	cytosol	80.33	71.71
CDY23345	Canola	cytosol	80.33	71.71
CDY30389	Canola	cytosol	80.33	71.71
Bra003373.1-P	Field mustard	cytosol	79.78	71.57
KXG28636	Sorghum	cytosol	45.9	70.59
KRG96588	Soybean	cytosol	68.85	69.81
Bra004752.1-P	Field mustard	cytosol, plasma membrane	81.15	69.56
KRH31739	Soybean	cytosol, endoplasmic reticulum, mitochondrion	68.58	69.53
AT2G43230.2	Thale cress	cytosol	83.33	69.32
KRH68320	Soybean	cytosol, endoplasmic reticulum, nucleus	68.31	69.25
KRH69158	Soybean	endoplasmic reticulum	68.03	68.98
Zm00001d032997_P001	Maize	cytosol	9.56	68.63
Zm00001d042500_P001	Maize	cytosol, mitochondrion	76.78	68.54
TraesCS3A01G395900.1	Wheat	plasma membrane	74.32	68.17
HORVU6Hr1G093170.3	Barley	cytosol	35.79	67.88
KRG95420	Soybean	cytosol	66.39	66.58
KRH50647	Soybean	cytosol	65.3	66.39
KRH02454	Soybean	cytosol	65.3	66.39
KRH67091	Soybean	cytosol	65.85	65.85
KRH38074	Soybean	cytosol	65.57	65.57
Zm00001d005450_P003	Maize	cytosol	76.23	63.41
Zm00001d031689_P004	Maize	plasma membrane	73.5	62.41
CDY50915	Canola	mitochondrion	16.12	61.46
Zm00001d019515_P008	Maize	cytosol, mitochondrion, plasma membrane	75.68	60.09
Solyc09g098570.1.1	Tomato	mitochondrion	19.4	53.79
HORVU5Hr1G120520.6	Barley	plastid	75.96	52.06

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.38.1	Gene3D:3.30.200.20	EntrezGene:548003	EMBL:ACUP02012778	UniProt:C6ZRT7
EMBL:FJ014778	EnsemblPlantsGene:GLYMA_20G245600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0004675	GO:GO:0004713	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0018108	GO:GO:0019538
GO:GO:0038023	InterPro:IPR000719	EnsemblPlants:KRG93051	ProteinID:KRG93051	ProteinID:KRG93051.1	InterPro:Kinase-like_dom_sf
PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00109	PFscan:PS50011	PANTHER:PTHR27001
PANTHER:PTHR27001:SF115	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00219	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Tyr_kinase_AS	InterPro:Tyr_kinase_cat_dom	UniParc:UPI0001B0705B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:+:47596189..47600780

Molecular Weight (calculated)

40370.3 Da

IEP (calculated)

8.120

GRAVY (calculated)

-0.412

Length

366 amino acids

Sequence
(BLAST)

001: MRRWLCCTCQ VEESYPSNEN EHLKSPRNYG DGNQKGSKVS APVKPETQKA PPPIEAPALS LDELKEKTDN FGSKALIGEG SYGRVYYATL NNGKAVAVKK
101: LDVSSEPESN NEFLTQVSMV SRLKDDNFVE LHGYCVEGNL RVLAYEFATM GSLHDILHGR KGVQGAQPGP TLDWIQRVRI AVDAARGLEY LHEKVQPPII
201: HRDIRSSNVL IFEDYKAKIA DFNLSNQAPD MAARLHSTRV LGTFGYHAPE YAMTGQLTQK SDVYSFGVVL LELLTGRKPV DHTMPRGQQS LVTWATPRLS
301: EDKVKQCVDP KLKGEYPPKG VAKLGAVAAL CVQYEAEFRP NMSIVVKALQ PLLKSPAPAP APVPES

Best Arabidopsis Sequence Match ( AT3G59350.6 )
(BLAST)

001: MDDMNKEVSA QIFVRVISLI MTLMMMTLQA NDRSPAQFVR LDKPRAVDDL YIGKREKMRR WLCCACHVEE PYHSSENEHL RSPKHHNDFG HHTRKPQAAV
101: KPDALKEPPS IDVPALSLDE LKEKTDNFGS KSLIGEGSYG RAYYATLKDG KAVAVKKLDN AAEPESNVEF LTQVSRVSKL KHDNFVELFG YCVEGNFRIL
201: AYEFATMGSL HDILHGRKGV QGAQPGPTLD WIQRVRIAVD AARGLEYLHE KVQPAVIHRD IRSSNVLLFE DFKAKIADFN LSNQSPDMAA RLHSTRVLGT
301: FGYHAPEYAM TGQLTQKSDV YSFGVVLLEL LTGRKPVDHT MPRGQQSLVT WATPRLSEDK VKQCVDPKLK GEYPPKAVAK LAAVAALCVQ YESEFRPNMS
401: IVVKALQPLL RSSTAAAVPV QEA

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM53]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.