CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69158	Soybean	endoplasmic reticulum	97.51	97.51
KRG96588	Soybean	cytosol	90.3	90.3
KRH68320	Soybean	cytosol, endoplasmic reticulum, nucleus	90.03	90.03
VIT_07s0005g02270.t01	Wine grape	cytosol	87.53	87.29
Bra004479.1-P	Field mustard	cytosol	82.83	82.37
CDX80077	Canola	cytosol	82.83	82.37
CDY37782	Canola	cytosol	82.55	82.09
AT3G62220.3	Thale cress	cytosol	81.44	81.44
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	79.78	79.56
GSMUA_Achr8P10860_001	Banana	cytosol	79.5	79.28
Os05t0135800-01	Rice	plasma membrane	78.39	78.39
Zm00001d010919_P001	Maize	cytosol, mitochondrion, plasma membrane	77.29	78.37
TraesCS1D01G081400.3	Wheat	cytosol	77.84	77.62
Zm00001d008177_P001	Maize	cytosol, extracellular	76.73	77.59
EES17666	Sorghum	cytosol	77.56	77.35
OQU86753	Sorghum	cytosol	77.29	75.61
AT2G47060.4	Thale cress	cytosol	82.83	75.31
TraesCS1B01G097700.1	Wheat	golgi	77.84	73.18
TraesCS1A01G079700.1	Wheat	mitochondrion	77.84	73.18
KRH50647	Soybean	cytosol	72.85	73.06
Zm00001d024755_P004	Maize	plasma membrane	77.84	72.61
KRH02454	Soybean	cytosol	72.3	72.5
KRG93051	Soybean	endoplasmic reticulum, nucleus	69.53	68.58
GSMUA_Achr3P01080_001	Banana	mitochondrion	68.7	68.32
KRG95420	Soybean	cytosol	64.54	63.84
KRH67091	Soybean	cytosol	64.27	63.39
KRH38074	Soybean	cytosol	63.71	62.84
KRH36313	Soybean	cytosol, mitochondrion	69.81	62.38
GSMUA_Achr3P12800_001	Banana	cytosol, mitochondrion	58.17	60.0

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100808383	MapMan:18.4.1.38.1	Gene3D:3.30.200.20	EMBL:ACUP02006081	EMBL:BT095769
UniProt:C6TDV2	EMBL:FJ014814	EnsemblPlantsGene:GLYMA_10G009100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	ProteinID:KRH31738.1	EnsemblPlants:KRH31739	ProteinID:KRH31739	ProteinID:KRH31739.1	InterPro:Kinase-like_dom_sf
PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001
PANTHER:PTHR27001:SF56	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0001B06CF2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:877889..881886

Molecular Weight (calculated)

39131.6 Da

IEP (calculated)

6.351

GRAVY (calculated)

-0.252

Length

361 amino acids

Sequence
(BLAST)

001: MSCFSCCEED DLHKAAESGG PYVVKNPAGN DGNYLASETA KQGTQPVKPQ PIEVPNISAD ELKEVTDNFG QDALIGEGSY GRVYYGVLKS ELAAAIKKLD
101: ASKQPDEEFL AQVSMVSRLK HENFVQLLGY CIDGSSRILA YEFASNGSLH DILHGRKGVK GAQPGPVLTW AQRVKIAVGA ARGLEYLHEK ADPHIIHRDI
201: KSSNVLIFDD DVAKIADFDL SNQAPDMAAR LHSTRVLGTF GYHAPEYAMT GQLNAKSDVY SFGVVLLELL TGRKPVDHTL PRGQQSLVTW ATPKLSEDKV
301: RQCVDTRLGG EYPPKAVAKM AAVAALCVQY EADFRPNMSI VVKALQPLLT ARPGPAGEIP N

Best Arabidopsis Sequence Match ( AT3G62220.3 )
(BLAST)

001: MSCFGCCRED DLPGANDYGG HNMTKQSGGN DGRRNGSETA QKGAQSVKVQ PIEVAAILAD ELIEATNDFG TNSLIGEGSY ARVYHGVLKN GQRAAIKKLD
101: SNKQPNEEFL AQVSMVSRLK HVNFVELLGY SVDGNSRILV FEFAQNGSLH DILHGRKGVK GAKPGPLLSW HQRVKIAVGA ARGLEYLHEK ANPHVIHRDI
201: KSSNVLIFDN DVAKIADFDL SNQAPDMAAR LHSTRVLGTF GYHAPEYAMT GQLSAKSDVY SFGVVLLELL TGRKPVDHTL PRGQQSLVTW ATPKLSEDKV
301: KQCVDSRLGG DYPPKAVAKL AAVAALCVQY EADFRPNMSI VVKALQPLLN ARTGPAGEGA P

Arabidopsis Description

At3g62220 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.