CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31739	Soybean	cytosol, endoplasmic reticulum, mitochondrion	97.51	97.51
KRG96588	Soybean	cytosol	90.58	90.58
KRH68320	Soybean	cytosol, endoplasmic reticulum, nucleus	90.03	90.03
VIT_07s0005g02270.t01	Wine grape	cytosol	87.26	87.02
Bra004479.1-P	Field mustard	cytosol	82.27	81.82
CDX80077	Canola	cytosol	82.27	81.82
CDY37782	Canola	cytosol	82.27	81.82
AT3G62220.3	Thale cress	cytosol	81.44	81.44
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	79.5	79.28
GSMUA_Achr8P10860_001	Banana	cytosol	79.22	79.01
Zm00001d010919_P001	Maize	cytosol, mitochondrion, plasma membrane	77.01	78.09
Os05t0135800-01	Rice	plasma membrane	77.84	77.84
TraesCS1D01G081400.3	Wheat	cytosol	77.29	77.07
EES17666	Sorghum	cytosol	77.29	77.07
Zm00001d008177_P001	Maize	cytosol, extracellular	76.18	77.03
OQU86753	Sorghum	cytosol	76.73	75.07
AT2G47060.4	Thale cress	cytosol	82.27	74.81
KRH50647	Soybean	cytosol	72.85	73.06
TraesCS1B01G097700.1	Wheat	golgi	77.29	72.66
TraesCS1A01G079700.1	Wheat	mitochondrion	77.29	72.66
KRH02454	Soybean	cytosol	72.3	72.5
Zm00001d024755_P004	Maize	plasma membrane	77.56	72.35
GSMUA_Achr3P01080_001	Banana	mitochondrion	68.7	68.32
KRG93051	Soybean	endoplasmic reticulum, nucleus	68.98	68.03
KRG95420	Soybean	cytosol	64.54	63.84
KRH67091	Soybean	cytosol	64.27	63.39
KRH38074	Soybean	cytosol	63.71	62.84
KRH36313	Soybean	cytosol, mitochondrion	69.25	61.88
GSMUA_Achr3P12800_001	Banana	cytosol, mitochondrion	58.17	60.0

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100817460	MapMan:18.4.1.38.1	Gene3D:3.30.200.20	EMBL:ACUP02000689	EnsemblPlantsGene:GLYMA_02G008500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675
GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0038023	UniProt:I1JBB6	InterPro:IPR000719	EnsemblPlants:KRH69158	ProteinID:KRH69158
ProteinID:KRH69158.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF56	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00023BDB84	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:857142..859598

Molecular Weight (calculated)

39100.5 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.304

Length

361 amino acids

Sequence
(BLAST)

001: MSCFSCCEED DLHKAAESGG PYVVKNPAGN DGNYHASQTA KQGTQPVKPQ PIEVPNISAD ELKEVTDNFG QDSLIGEGSY GRVYYGVLKS GQAAAIKNLD
101: ASKQPDEEFL AQVSMVSRLK HENFVQLLGY CIDGTSRILA YQFASNGSLH DILHGRKGVK GAQPGPVLTW AQRVKIAVGA ARGLEYLHEK ADPHIIHRDI
201: KSSNVLIFDD DVAKIADFDL SNQAPDMAAR LHSTRVLGTF GYHAPEYAMT GQLNAKSDVY SFGVVLLELL TGRKPVDHTL PRGQQSLVTW ATPKLSEDKV
301: RQCVDTRLGG EYPPKAVAKM AAVAALCVQY EADFRPNMSI VVKALQPLLT ARPGPAGETP N

Best Arabidopsis Sequence Match ( AT3G62220.3 )
(BLAST)

001: MSCFGCCRED DLPGANDYGG HNMTKQSGGN DGRRNGSETA QKGAQSVKVQ PIEVAAILAD ELIEATNDFG TNSLIGEGSY ARVYHGVLKN GQRAAIKKLD
101: SNKQPNEEFL AQVSMVSRLK HVNFVELLGY SVDGNSRILV FEFAQNGSLH DILHGRKGVK GAKPGPLLSW HQRVKIAVGA ARGLEYLHEK ANPHVIHRDI
201: KSSNVLIFDN DVAKIADFDL SNQAPDMAAR LHSTRVLGTF GYHAPEYAMT GQLSAKSDVY SFGVVLLELL TGRKPVDHTL PRGQQSLVTW ATPKLSEDKV
301: KQCVDSRLGG DYPPKAVAKL AAVAALCVQY EADFRPNMSI VVKALQPLLN ARTGPAGEGA P

Arabidopsis Description

At3g62220 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.