CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96588	Soybean	cytosol	97.78	97.78
KRH69158	Soybean	endoplasmic reticulum	90.03	90.03
KRH31739	Soybean	cytosol, endoplasmic reticulum, mitochondrion	90.03	90.03
VIT_07s0005g02270.t01	Wine grape	cytosol	84.76	84.53
Bra004479.1-P	Field mustard	cytosol	82.83	82.37
CDX80077	Canola	cytosol	82.83	82.37
CDY37782	Canola	cytosol	82.83	82.37
AT3G62220.3	Thale cress	cytosol	80.33	80.33
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	78.67	78.45
Zm00001d010919_P001	Maize	cytosol, mitochondrion, plasma membrane	76.73	77.81
GSMUA_Achr8P10860_001	Banana	cytosol	77.84	77.62
TraesCS1D01G081400.3	Wheat	cytosol	77.29	77.07
EES17666	Sorghum	cytosol	77.01	76.8
Zm00001d008177_P001	Maize	cytosol, extracellular	75.9	76.75
Os05t0135800-01	Rice	plasma membrane	76.73	76.73
OQU86753	Sorghum	cytosol	76.18	74.53
AT2G47060.4	Thale cress	cytosol	81.72	74.31
TraesCS1B01G097700.1	Wheat	golgi	77.29	72.66
TraesCS1A01G079700.1	Wheat	mitochondrion	77.29	72.66
Zm00001d024755_P004	Maize	plasma membrane	77.29	72.09
KRH50647	Soybean	cytosol	70.64	70.83
KRH02454	Soybean	cytosol	70.08	70.28
KRG93051	Soybean	endoplasmic reticulum, nucleus	69.25	68.31
GSMUA_Achr3P01080_001	Banana	mitochondrion	68.14	67.77
KRG95420	Soybean	cytosol	64.54	63.84
KRH67091	Soybean	cytosol	64.27	63.39
KRH38074	Soybean	cytosol	63.16	62.3
KRH36313	Soybean	cytosol, mitochondrion	69.25	61.88
GSMUA_Achr3P12800_001	Banana	cytosol, mitochondrion	56.79	58.57

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100813950	MapMan:18.4.1.38.1	Gene3D:3.30.200.20	EMBL:ACUP02002107	EnsemblPlantsGene:GLYMA_03G223100
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675
GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0038023	UniProt:I1JQW0	InterPro:IPR000719	EnsemblPlants:KRH68320	ProteinID:KRH68320
ProteinID:KRH68320.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF56	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002339D6C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:42587735..42591643

Molecular Weight (calculated)

39273.7 Da

IEP (calculated)

6.949

GRAVY (calculated)

-0.316

Length

361 amino acids

Sequence
(BLAST)

001: MSCFSCCEED DYQKASESGG QHVVKNSTGN HGNGRASETA KQGTQAVKIQ PIEVPELPVD ELKEITDGFG ESSLIGEGSY GRVYYGVLKS RQAAAIKKLD
101: ASKQPDDEFL AQVSMVSRLK HDNFVQLLGY CIDGNSRVLA YEFASNGSLH DILHGRKGVK GAQPGPVLTW TQRVKIAVGA AKGLEYLHER ADPHIIHRDI
201: KSSNVLIFDD DVAKIADFDL SNQAPDMAAR LHSTRVLGTF GYHAPEYAMT GQLNAKSDVY SFGVVLLELL TGRKPVDHTL PRGQQSLVTW ATPRLSEDKV
301: RQCVDARLGG EYLPKAVAKM AAVAALCVQY EADFRPNMSI VVKALQPLLN ARHGPAGETP N

Best Arabidopsis Sequence Match ( AT2G47060.1 )
(BLAST)

001: MSCFGCCGED DDMHKTADYG GRHNQAKHFP PGNDARHHQA SETAQKGPPV VKLQPIEVPI IPFSELKEAT DDFGSNSLIG EGSYGRVYYG VLNNDLPSAI
101: KKLDSNKQPD NEFLAQVSMV SRLKHDNFVQ LLGYCVDGNS RILSYEFANN GSLHDILHGR KGVKGAQPGP VLSWYQRVKI AVGAARGLEY LHEKANPHII
201: HRDIKSSNVL LFEDDVAKIA DFDLSNQAPD MAARLHSTRV LGTFGYHAPE YAMTGQLNAK SDVYSFGVVL LELLTGRKPV DHRLPRGQQS LVTWATPKLS
301: EDKVKQCVDA RLGGDYPPKA VAKLAAVAAL CVQYEADFRP NMSIVVKALQ PLLNARAVAP GEGVH

Arabidopsis Description

Protein kinase superfamily protein [Source:TAIR;Acc:AT2G47060]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.