CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
extracellular 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30120	Soybean	cytosol, mitochondrion, plastid	87.03	86.56
VIT_06s0004g07990.t01	Wine grape	cytosol	66.58	69.59
Solyc02g043860.2.1	Tomato	cytosol	57.57	69.31
CDX86509	Canola	cytosol	42.52	68.41
AT1G06900.1	Thale cress	cytosol	62.97	68.26
Bra030665.1-P	Field mustard	cytosol	59.19	67.32
CDY10234	Canola	cytosol	58.65	66.84
CDY09948	Canola	cytosol	56.13	65.79
CDY15592	Canola	cytosol	40.9	64.67
GSMUA_Achr9P04800_001	Banana	cytosol	60.45	64.52
Bra015536.1-P	Field mustard	cytosol	58.74	63.98
CDY54887	Canola	cytosol	58.56	63.91
Os03t0336300-01	Rice	plasma membrane	56.94	60.77
KXG39425	Sorghum	nucleus	56.49	60.64
Zm00001d047518_P004	Maize	nucleus	56.49	60.52
TraesCS4D01G171500.1	Wheat	cytosol	53.42	60.33
TraesCS4B01G169500.2	Wheat	cytosol	55.68	59.88
TraesCS4A01G135700.2	Wheat	cytosol	55.77	59.81
HORVU4Hr1G050160.2	Barley	cytosol	55.68	54.64
Bra031544.1-P	Field mustard	nucleus	15.68	50.14
CDY06238	Canola	nucleus	11.44	41.23
KRH66936	Soybean	cytosol	28.11	32.37
KRG95264	Soybean	cytosol	27.93	32.16
KRH15819	Soybean	extracellular	4.5	28.09

Protein Annotations

EntrezGene:100797049	MapMan:19.4.5.4.2	Gene3D:3.30.830.10	EMBL:ACUP02010846	EnsemblPlantsGene:GLYMA_18G053700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004222	GO:GO:0005488	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	UniProt:I1MZR2	EnsemblPlants:KRG98151	ProteinID:KRG98151
ProteinID:KRG98151.1	MEROPS:M16.005	InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193	PFAM:PF16187
ScanProsite:PS00143	PANTHER:PTHR43690	PANTHER:PTHR43690:SF1	InterPro:Pept_M16_N	InterPro:Pept_M16_Zn_BS	InterPro:Peptidase_M16_C
InterPro:Peptidase_M16_M	SUPFAM:SSF63411	UniParc:UPI000295E487	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:4646738..4658401

Molecular Weight (calculated)

127454.0 Da

IEP (calculated)

4.901

GRAVY (calculated)

-0.362

Length

1110 amino acids

Sequence
(BLAST)

0001: MSIDSRVLFL PYQRRTRVGL QVPHPFPIKT RTTSTALCLR QLRLTTIAQK KPFAAKPRSL SPIHYSHFLQ NHKKKKFVTI MGMKGAPATL SDDDVVLKSP
0101: NDRRLYRLIH LPNGLRALLV HDPEIYPEGP PKHVSNEDEV EEEDDDDEEE DEDEEEEEED EDDDDDDEEE EEGNEMDGVK GGAAAAQSKK AAAAMCVGMG
0201: SFSDPYEAQG LAHFLEHMLF MGSDEFPDEN EYDSYLSKHG GSSNAYTETE YTCYHFEVKR EFLKGALKRF SQFFISPLVK MEAMEREVLA VDSEFNQVLQ
0301: SDACRLQQLQ CHTAAHNHPL NRFFWGNKKS LVDAMEKGIN LREQILKLYK EYYHGGLMKL VVIGGESLDV LESWVVELFG AVKKGQANPV FTVEGPIWKS
0401: GKVYRLEAVK DVHILDLSWT LPCLHQEYLK KPEDYLAHLL GHEGRGSLLS FLKSRGWATS LSAGVGEEGI YRSSIAYVFV MSIHLTDSGV EKIFDIIGFV
0501: YQYLKLLSQD SPQEWIFKEL QNIGNMDFRF AEEQPPDDYA AELAENMHFY PPEHVIYGDY VFKTWDKQLL KQVLGFFIPE NMRVDVVSKS FLKSEDFQYE
0601: PWFGSRYVEE DIGQSFMELW RNPPEIDVSL HLPSKNEFIP SDFSIRASDT CVDDFANSTS PRCIIDEALI KLWYKPDSTF KVPRANTYFR ITMKGGYADV
0701: KSCVLSELFI HLLKDELNEI TYQASIAKLE TSVTYVGDML ELKVYGFNEK LPVLLSKFFS VSKSFVPTDD RFKVIKEDMK RALKNTNMKP LSHSTYLRLQ
0801: VLCESFYDAD EKLCYLNDLF LDDLKAFIPG LLSQIYVEGL CHGNLSKEEA INISKIFKMS FPVNPLPIEL RHAERVICLP SSANLVRDVN VKNKSEKNSV
0901: VELYFQIDQD FGLGSIKLKA LIDLFDEIVE EPFFNQLRTK EQLGYVVECS PRVTYRVFGF CFCVQSSEYN PVYLQGRIEN FLNGLEELLD GLDGDSFENY
1001: KSGLVAKLLE KDPSLTYESN RLWNQIVEKR YIFDLSKKEA EELKNISKHD IVEWYKTYLK PSSPKCRQLL IRLWGCNTDL KEAEALPKSV LAITDPAAFK
1101: MQSKFYPSFC

Best Arabidopsis Sequence Match ( AT1G06900.1 )
(BLAST)

0001: MSSMKSVSAL DNVVVKSPND RRLYRVIELE NGLCALLIHD PDIYPEGSVP DQIDEDDEDG EEEDSDGSSE DDDDDEDDEE DGEGDEEDED EDEDEVKGKG
0101: DHQTKKAAAA MCVSMGSFLD PPEAQGLAHF LEHMLFMGST EFPDENEYDS YLSKHGGSSN AYTEMEHTCY HFEVKREFLQ GALKRFSQFF VAPLMKTEAM
0201: EREVLAVDSE FNQALQNDAC RLQQLQCYTS AKGHPFNRFA WGNKKSLSGA MENGVDLREC IVKLYKEYYH GGLMKLVVIG GESLDMLESW VVELFGDVKN
0301: GSKIRPTLEA EGPIWKGGKL YRLEAVKDVH ILDLTWTLPP LRSAYVKKPE DYLAHLLGHE GRGSLHSFLK AKGWATSLSA GVGDDGINRS SLAYVFGMSI
0401: HLTDSGLEKI YDIIGYIYQY LKLLRDVSPQ EWIFKELQDI GNMDFRFAEE QPADDYAAEL SENMLAYPVE HVIYGDYVYQ TWDPKLIEDL MGFFTPQNMR
0501: IDVVSKSIKS EEFQQEPWFG SSYIEEDVPL SLMESWSNPS EVDNSLHLPS KNQFIPCDFS IRAINSDVDP KSQSPPRCII DEPFMKFWYK LDETFKVPRA
0601: NTYFRINLKG AYASVKNCLL TELYINLLKD ELNEIIYQAS IAKLETSLSM YGDKLELKVY GFNEKIPALL SKILAIAKSF MPNLERFKVI KENMERGFRN
0701: TNMKPLNHST YLRLQLLCKR IYDSDEKLSV LNDLSLDDLN SFIPELRSQI FIEALCHGNL SEDEAVNISN IFKDSLTVEP LPSKCRHGEQ ITCFPMGAKL
0801: VRDVNVKNKS ETNSVVELYY QIEPEEAQST RTKAVLDLFH EIIEEPLFNQ LRTKEQLGYV VECGPRLTYR VHGFCFCVQS SKYGPVHLLG RVDNFIKDIE
0901: GLLEQLDDES YEDYRSGMIA RLLEKDPSLL SETNDLWSQI VDKRYMFDFS HKEAEELRSI QKKDVISWYK TYFRESSPKC RRLAVRVWGC DTNMKETQTD
1001: QKAVQVIADA VAFKSTSKFY PSLC

Arabidopsis Description

Nardilysin-like [Source:UniProtKB/Swiss-Prot;Acc:F4HNU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.