CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031544.1-P	Field mustard	nucleus	87.01	77.23
CDY15592	Canola	cytosol	56.49	24.79
CDY10234	Canola	cytosol	58.12	18.38
CDY54887	Canola	cytosol	56.49	17.11
CDX86509	Canola	cytosol	35.06	15.65
CDY72352	Canola	cytosol, peroxisome	16.56	15.18
CDY09948	Canola	cytosol	41.88	13.62
VIT_06s0004g07990.t01	Wine grape	cytosol	40.58	11.77
KRH30120	Soybean	cytosol, mitochondrion, plastid	42.21	11.65
KRG98151	Soybean	nucleus	41.23	11.44
GSMUA_Achr9P04800_001	Banana	cytosol	35.71	10.58
Zm00001d047518_P004	Maize	nucleus	35.06	10.42
KXG39425	Sorghum	nucleus	34.74	10.35
Solyc02g043860.2.1	Tomato	cytosol	30.19	10.09
TraesCS4A01G135700.2	Wheat	cytosol	33.77	10.05
Os03t0336300-01	Rice	plasma membrane	33.77	10.0
TraesCS4D01G171500.1	Wheat	cytosol	31.82	9.97
TraesCS4B01G169500.2	Wheat	cytosol	32.79	9.79
CDY43076	Canola	cytosol	21.75	9.34
HORVU4Hr1G050160.2	Barley	cytosol	33.12	9.02
CDY33824	Canola	extracellular	3.57	8.4
CDX88949	Canola	cytosol	21.43	6.78
CDY31008	Canola	cytosol	20.78	6.57
CDY06103	Canola	cytosol	20.45	6.45
CDY33819	Canola	cytosol, extracellular	20.13	6.39
CDY48762	Canola	cytosol	19.81	6.29
CDX79914	Canola	cytosol	19.48	6.19
CDY61872	Canola	cytosol	19.16	5.97
CDY05626	Canola	cytosol	8.12	5.14
CDY33897	Canola	cytosol	16.23	4.96
CDY05627	Canola	cytosol	3.57	3.56
CDY33909	Canola	plasma membrane	7.14	2.56
CDY54849	Canola	cytosol	1.3	2.34
CDX72028	Canola	cytosol	3.9	2.15

Protein Annotations

EnsemblPlants:CDY06238	EnsemblPlantsGene:GSBRNA2T00122153001	Gene3D:3.30.830.10	GO:A0A078F3B6	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0046872	InterPro:Metalloenz_LuxS/M16	PANTHER:PTHR43690	PANTHER:PTHR43690:SF1	ProteinID:CDY06238
ProteinID:CDY06238.1	SEG:seg	SUPFAM:SSF63411	UniParc:UPI0004EDC140	MapMan:35.1	:

Description

BnaA09g49650D

Coordinates

chrLK031968:-:429887..431916

Molecular Weight (calculated)

34944.7 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.729

Length

308 amino acids

Sequence
(BLAST)

001: MPHYKFFSTS APGGSETSRI YSSRIPAAAA AALLHESLSQ YDDDDGEEEE DSDGSYEGDD EEGDDMDEDE VKEKGEQQTK KQLLCKRIYD SDEKLSVLND
101: LSLTDLNSFI PVVRSQIFIE ALCHGNLSED EAVNISRIFK NSLTTEPLPV KSRHREQITC FPLSAKLARD VNVKNKSETN SVVELYYQIE PEEAQSTKNE
201: SYAGSISRNH RRAIVQSVKD KGAAWLYIEG LLVRLSRRAK KHREKKDVIS WYKTYFRESS PKCRRLAVRV WGCDTNMKET QTDPKSVQQV IADAVAFKST
301: SQFYPSLC

Best Arabidopsis Sequence Match ( AT1G06900.1 )
(BLAST)

0001: MSSMKSVSAL DNVVVKSPND RRLYRVIELE NGLCALLIHD PDIYPEGSVP DQIDEDDEDG EEEDSDGSSE DDDDDEDDEE DGEGDEEDED EDEDEVKGKG
0101: DHQTKKAAAA MCVSMGSFLD PPEAQGLAHF LEHMLFMGST EFPDENEYDS YLSKHGGSSN AYTEMEHTCY HFEVKREFLQ GALKRFSQFF VAPLMKTEAM
0201: EREVLAVDSE FNQALQNDAC RLQQLQCYTS AKGHPFNRFA WGNKKSLSGA MENGVDLREC IVKLYKEYYH GGLMKLVVIG GESLDMLESW VVELFGDVKN
0301: GSKIRPTLEA EGPIWKGGKL YRLEAVKDVH ILDLTWTLPP LRSAYVKKPE DYLAHLLGHE GRGSLHSFLK AKGWATSLSA GVGDDGINRS SLAYVFGMSI
0401: HLTDSGLEKI YDIIGYIYQY LKLLRDVSPQ EWIFKELQDI GNMDFRFAEE QPADDYAAEL SENMLAYPVE HVIYGDYVYQ TWDPKLIEDL MGFFTPQNMR
0501: IDVVSKSIKS EEFQQEPWFG SSYIEEDVPL SLMESWSNPS EVDNSLHLPS KNQFIPCDFS IRAINSDVDP KSQSPPRCII DEPFMKFWYK LDETFKVPRA
0601: NTYFRINLKG AYASVKNCLL TELYINLLKD ELNEIIYQAS IAKLETSLSM YGDKLELKVY GFNEKIPALL SKILAIAKSF MPNLERFKVI KENMERGFRN
0701: TNMKPLNHST YLRLQLLCKR IYDSDEKLSV LNDLSLDDLN SFIPELRSQI FIEALCHGNL SEDEAVNISN IFKDSLTVEP LPSKCRHGEQ ITCFPMGAKL
0801: VRDVNVKNKS ETNSVVELYY QIEPEEAQST RTKAVLDLFH EIIEEPLFNQ LRTKEQLGYV VECGPRLTYR VHGFCFCVQS SKYGPVHLLG RVDNFIKDIE
0901: GLLEQLDDES YEDYRSGMIA RLLEKDPSLL SETNDLWSQI VDKRYMFDFS HKEAEELRSI QKKDVISWYK TYFRESSPKC RRLAVRVWGC DTNMKETQTD
1001: QKAVQVIADA VAFKSTSKFY PSLC

Arabidopsis Description

Nardilysin-like [Source:UniProtKB/Swiss-Prot;Acc:F4HNU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.