CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02526	Soybean	cytosol	96.97	96.97
VIT_11s0016g00170.t01	Wine grape	cytosol, plastid	80.47	79.8
CDY44841	Canola	cytosol	74.02	76.24
Bra019446.1-P	Field mustard	cytosol	74.13	75.62
AT3G43300.1	Thale cress	cytosol	74.52	75.54
KXG36486	Sorghum	cytosol	71.32	74.55
TraesCS2B01G230000.1	Wheat	cytosol, golgi	68.8	73.86
TraesCS2A01G202900.1	Wheat	cytosol	65.66	73.82
CDY30954	Canola	extracellular, golgi	34.4	73.59
HORVU2Hr1G040020.14	Barley	cytosol	70.54	73.34
Zm00001d021806_P005	Maize	cytosol	70.82	73.33
Zm00001d006607_P066	Maize	cytosol	70.48	73.19
TraesCS2D01G212800.2	Wheat	golgi	70.03	72.77
Solyc12g017830.1.1	Tomato	plastid	71.83	72.32
GSMUA_Achr2P14140_001	Banana	cytosol, extracellular, nucleus	69.42	70.24
GSMUA_Achr4P27650_001	Banana	cytosol, extracellular, plastid	70.54	70.03
Os07t0564700-01	Rice	plasma membrane	11.17	57.85
KRH00582	Soybean	extracellular, golgi	6.68	49.79
KRH00583	Soybean	endoplasmic reticulum, vacuole	3.25	39.46
KRH00580	Soybean	cytosol	34.74	34.72
KRH65253	Soybean	cytosol	34.62	34.62
KRH40586	Soybean	cytosol	34.57	34.53
KRH76287	Soybean	cytosol	34.57	34.07
KRH74111	Soybean	plastid	31.14	32.25
KRH13998	Soybean	plastid	30.98	32.21
KRH31013	Soybean	cytosol	13.64	19.26
KRG97867	Soybean	cytosol	15.88	19.21
KRH31014	Soybean	nucleus	15.82	19.14
KRG97865	Soybean	cytosol	15.77	19.08
KRH73064	Soybean	cytosol	15.66	18.95
KRH15072	Soybean	cytosol	15.66	18.88
KRH39264	Soybean	cytosol	13.13	17.04
KRH48417	Soybean	cytosol	8.14	14.96

Protein Annotations

Gene3D:1.10.1000.11	Gene3D:1.10.220.20	EntrezGene:100794995	MapMan:22.3.3.2	EMBL:ACUP02008180	InterPro:ARM-type_fold
ncoils:Coil	InterPro:DCB_dom	EnsemblPlantsGene:GLYMA_13G115800	GO:GO:0003674	GO:GO:0005086	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032012
GO:GO:0065009	UniProt:I1LYC1	InterPro:IPR000904	InterPro:IPR023394	EnsemblPlants:KRH19417	ProteinID:KRH19417
ProteinID:KRH19417.1	PFAM:PF01369	PFAM:PF09324	PFAM:PF12783	PFAM:PF16213	PFscan:PS50190
PANTHER:PTHR10663	PANTHER:PTHR10663:SF312	SMART:SM00222	SUPFAM:SSF48371	SUPFAM:SSF48425	InterPro:Sec7_C
InterPro:Sec7_C_sf	InterPro:Sec7_N	InterPro:Sec7_dom	InterPro:Sec7_dom_sf	UniParc:UPI000296229B	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:22926867..22943012

Molecular Weight (calculated)

197737.0 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.173

Length

1782 amino acids

Sequence
(BLAST)

0001: MAGGAAGGFV TRAFDSILKE CSSVKKFPEL QKAIQNYTDI TKQASQKKQS EVNQAAPSAE SGSTNETEGG AATRTEADQF QKAEHASDDR PKIGNINVVL
0101: ASAGNTLEGA DAELVLNPLR LAFETKNLKI LESALDCLHK LIAYDHLEGD PGLEGGKNVP LFTDILNMVC SCVDNSSPDS TILQVLKVLL TAVASTKFRV
0201: HGEPLLGVIR VCYNIALNSK SPINQATSKA MLTQMISITF RRMETDPVEA SSASSGHTIS KAASAENLNS KSDESSTGDS NEKEMTLGDA LSQAKDASPT
0301: SLEELQNLAG GADIKGLEAV LDKAVHTEDG KKITRGIDLE SMSIVQRDAL LVFRTLCKMG MKEDNDEVTT KTRILSLELL QGLLEGVSHS FTKNFHFIDS
0401: VKAYLSYALL RASVSQSPVI FQYATGIFLV LLLRFRESLK GEIGIFFPLI VLRPLDGLEF PVNQKLSVLR MLEKVCKDPQ MLVDIFVNYD CDLEAPNLFE
0501: RMVTTLSKIA QGTQNTDPNS AALSQTASVK GSSLQGLVSV LKSLVDWEQS HRELEKLKNN QQEGISAGDS SEIRSREDVT SDFEKAKAHK STLEAAIAEF
0601: NRKPMKGVEY LISIKLVENT PASVAQFLKN TPNLDKATIG DYLGQHEEFP LAVMHAYVDS MKFSGFKFDT AIREFLKGFR LPGEAQKIDR IMEKFAERYC
0701: ADNPGLFKNA DTAYVLAYAV IMLNTDAHNP MVWPKMSKSD FVRMNARDDL DECAPKELLE EIYDSIVKEE IKMKDDTSLI GKSSRQKPEG EEGRLVSILN
0801: LALPKRKSSG DAKSESEAII KKTQAIFRNK GVKRGVFYTA QQIELVRPMV EAVGWPLLAT FSVTMEEGDN KPRVVLLMEG FKAGIHITFV LGMDTMRYAF
0901: LTSLVRFTFL HAPKEMRSKN VEALRTLLVL CDSDMNALQD TWNAVLECVS RLEFITSTPS ISVTVMHGSN QISKDAVVQS LKELAAKPAE QVFMNSVKLP
1001: SDSVVEFFTA LCGVSAEELK QTPARVFSLQ KLVEISYYNM ARIRMVWARI WSVLANHFIS AGSHHDEKIA MYAIDSLRQL SMKYLERAEL ANFSFQNDIL
1101: KPFVVLMRNS QSESKRRLIV DCIVQMIKSK VGSIKSGWRS VFMIFTASAD DELESIVESA FENVEQVILE HFDQVVGDCF MDCVNCLIRF ANNKTSHRIS
1201: LKAIALLRIC EDRLAEGLIP GGTLMPIDAT LDATFDVTEH YWFPMLAGLS DLTSDQRQEV RSCALEVLFD LLNERGSKFS TAFWESIFHR VLFPIFDHVR
1301: HAGKEGFISP DDDWFRETSI HSLQLLCNLF NTFYKEVCFM LPPLLGLLLD CAKKTDQTVV SISLGALVHL IEVGGHQFSE SDWDTLLKSI RDASYTTQPL
1401: ELLNVLSFEN LRNHGSIISD SEGNAGDSGT TRSIDNEVIG DRQLDVNSNG KLSPLASSNT NADGVEDSIS QTNVDQSEGL PSPSGRTPKA ADGEGFQRSQ
1501: TLGQRIMGNM ENLFLRNLTK SKSHISDASQ SSSPIKVADA VEPDTKNEES PLLVTVRGKC ITQLLLLGAI DGIQKKYWTK LKSQQKVSIM DILLSLLEFA
1601: ASYNSSTNLR TRMHQIPDER PPINLLRQEL AGTGIYLDIL QKATYGFETK KEKSPESVGF QDVDSTEVNG LSITQDSDSE VKFERLAEEK LVSFCEQVLR
1701: EASDLQSITG ETTNMDIHRV LELRAPIIVK VLQSMCFMNN KIFRRHLREF YPLLTKLVCC DQMDVRGALG DLFQAQLKPL LP

Best Arabidopsis Sequence Match ( AT3G43300.3 )
(BLAST)

0001: MAAGGFLTRA FDTMLKESGG KKFPDLQKAI QAYQDGSKVV TQAAPSSIVE SSQAEGGGEK TGVEADEPQK VTSAEVAQQA SQSKSETINV SLANAGHTLG
0101: GAEVELVLKP LRLAFETKNL KIFDAALDCL HKLIAYDHLE GDPGLDGGKN SAPFTDILNM VCSCVDNSSP DSTVLQVLKV LLTAVASGKF KVHGEPLLGV
0201: IRVCYNIALN SKSPINQATS KAMLTQMISI VFRRMETDIV SASSTVSQEE HVSGDTSSPK NEEITAADEN EKEMTLGDAL TQAKDTTLAS VEELHTLVGG
0301: ADIKGLEAAL DKAVHLEDGK KIKRGIELES MSIGQRDALL VFRTLCKMGM KEDSDEVTTK TRILSLELLQ GMLEGVSHSF TKNFHFIDSV KAYLSYALLR
0401: ASVSQSSVIF QYASGIFSVL LLRFRDSLKG EIGIFFPIIV LRSLDNSECP NDQKMGVLRM LEKVCKDPQM LVDVYVNYDC DLEAPNLFER MVTTLSKIAQ
0501: GSQSADPNPA MASQTASVKG SSLQCLVNVL KSLVDWEKIR REAENSTRNA NEDSASTGEP IETKSREDVP SNFEKAKAHK STMEAAISEF NRNSVKGVEY
0601: LIANKLVERN PASVAQFLRS TSSLSKVMIG DYLGQHEEFP LAVMHAYVDS MKFSEMKFHS AIREFLKGFR LPGEAQKIDR IMEKFAERYC ADNPGLFKNA
0701: DTAYVLAYAV IMLNTDAHNP MVWPKMSKSD FTRMNATNDP EDCAPTELLE EIYDSIVQEE IKLKDDDTMK KLSSQRPGGE ERGGLVSILN LGLPKRISAA
0801: DAKSETEDIV RKTQEIFRKH GVKRGVFHTV EQVDIIRPMV EAVGWPLLAA FSVTMEVGDN KPRILLCMEG FKAGIHIAYV LGMDTMRYAF LTSLVRFTFL
0901: HAPKEMRSKN VEALRILLGL CDSEPDTLQD TWNAVLECVS RLEFIISTPG IAATVMHGSN QISRDGVVQS LKELAGRPAE QVFVNSVKLP SESVVEFFTA
1001: LCGVSAEELK QSPARVFSLQ KLVEISYYNI ARIRMVWARI WSVLAEHFVS AGSHHDEKIA MYAIDSLRQL GMKYLERAEL TNFTFQNDIL KPFVIIMRNT
1101: QSQTIRSLIV DCIVQMIKSK VGSIKSGWRS VFMIFTAAAD DEVESIVEKS FENVEQVILE HFDQVIGDCF MDCVNCLIRF ANNKASDRIS LKAIALLRIC
1201: EDRLAEGLIP GGVLKPVDGN EDETFDVTEH YWFPMLAGLS DLTSDYRPEV RNCALEVLFD LLNERGNKFS TPFWESIFHR ILFPIFDHVS HAGKESLISS
1301: GDVKFRETSI HSLQLLCNLF NTFYKEVCFM LPPLLSLLLD CAKKSDQTVV SISLGALVHL IEVGGHQFSE GDWDMLLKSI RDASYTTQPL ELLNALSFDN
1401: PKKNLVLAGD IEADASDSPR VDRNPDDIKD NGKVSAQASP RIGTHGTSLE SGIPPKADGS EGRPSSSGRA QKDVDDVNLQ RSQTFGQRFM DNLFLRNLTS
1501: QPKSSVAEVT VPSSPYKHED PTEPDSREEE SPALGAIRGK CITQLLLLGA INSIQQKYWS NLKTPQKIAI MDILFSFIEF ASSYNSYSNL RTRMNHIPTE
1601: RPPLNLLRQE LEGTTIYLDV LQKTTSGLAD DASNSEDRLE GAAEEKLVSF CEQVLKETSD LQSTLGETTN MDVHRVLELR SPVIVKVLEG MCFMNNTIFR
1701: KHMREFYPLL TRLVCCEQME IRGALANLFK AQLKPLLQQ

Arabidopsis Description

ATMIN7HOPM interactor 7 [Source:TAIR;Acc:AT3G43300]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.