CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 3
cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82012	Canola	cytosol	86.08	86.08
Bra031177.1-P	Field mustard	cytosol	85.76	85.76
CDY13825	Canola	cytosol	85.76	85.76
AT2G21250.1	Thale cress	cytosol	85.76	85.76
Solyc01g110450.2.1	Tomato	extracellular	84.79	84.79
PGSC0003DMT400004180	Potato	cytosol, peroxisome, plastid	84.14	84.14
AT2G21260.1	Thale cress	cytosol	83.5	83.5
VIT_03s0038g00800.t01	Wine grape	cytosol	82.85	82.85
TraesCS6D01G072600.1	Wheat	cytosol	79.29	78.53
EES06204	Sorghum	cytosol	80.58	78.3
TraesCS6A01G079000.1	Wheat	golgi	78.96	78.21
Zm00001d053932_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	79.29	77.04
GSMUA_Achr9P24380_001	Banana	endoplasmic reticulum	83.5	76.33
TraesCS6B01G106100.1	Wheat	cytosol	76.05	75.32
TraesCS3B01G038800.1	Wheat	cytosol	77.35	74.92
TraesCS3D01G035900.1	Wheat	cytosol	75.73	73.35
TraesCS3A01G045300.1	Wheat	cytosol	75.08	72.73
HORVU6Hr1G013800.2	Barley	plastid	80.58	67.66
Os02t0123500-01	Rice	plasma membrane	80.91	66.67
KRH00040	Soybean	mitochondrion	35.92	38.54
KRH38984	Soybean	cytosol	39.16	38.05
KRH65858	Soybean	nucleus	38.19	37.7
KRH75702	Soybean	nucleus	37.86	37.38
KRH65854	Soybean	cytosol	37.86	37.38
KRH65857	Soybean	nucleus	37.86	37.38
KRH65915	Soybean	cytosol	37.54	36.83
KRH00045	Soybean	cytosol	37.86	36.79
KRH75705	Soybean	cytosol	37.22	36.51
KRH01577	Soybean	endoplasmic reticulum, nucleus	37.22	36.51
KRH09516	Soybean	cytosol	33.01	36.43
KRH23850	Soybean	mitochondrion	36.89	36.19
KRH75700	Soybean	cytosol, nucleus, peroxisome	26.86	36.09
KRH09515	Soybean	cytosol	37.54	36.02
KRH39940	Soybean	mitochondrion	36.25	35.56
KRH49170	Soybean	cytosol	34.3	35.45
KRH09512	Soybean	cytosol	36.57	35.31
KRH74034	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.92	35.24
KRG89550	Soybean	cytosol	36.57	35.2
KRH12716	Soybean	plastid	35.6	34.92
KRH14079	Soybean	cytosol	33.33	34.22
KRH00349	Soybean	cytosol	35.28	33.96
KRH38981	Soybean	cytosol	33.98	33.76
KRH40836	Soybean	cytosol	34.63	33.23
KRH71973	Soybean	cytoskeleton, cytosol, peroxisome	31.72	30.15

Protein Annotations

EntrezGene:100806500	Gene3D:3.20.20.100	MapMan:3.5.1	MapMan:3.6.3	EMBL:ACUP02007175	InterPro:Aldo/ket_reductase_CS
InterPro:Aldo/keto_reductase	EMBL:BT098271	UniProt:C6TKQ3	EnsemblPlantsGene:GLYMA_12G036700	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036812	EnsemblPlants:KRH24361
ProteinID:KRH24361	ProteinID:KRH24361.1	InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf	PFAM:PF00248	PIRSF:PIRSF000097
PRINTS:PR00069	ScanProsite:PS00062	ScanProsite:PS00063	ScanProsite:PS00798	PANTHER:PTHR11732	PANTHER:PTHR11732:SF209
SUPFAM:SSF51430	UniParc:UPI00001511A9	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:2665303..2667881

Molecular Weight (calculated)

34716.6 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.165

Length

309 amino acids

Sequence
(BLAST)

001: MAITLNNGFK MPIIGLGVWR MEGNEIRDLI LNSIKIGYRH FDCAADYKNE AEVGDALKEA FDSGLVKRED LFITTKLWNS DQGHVLEACK DSLKKLQLTY
101: LDLYLVHFPV AVRHTGVGNT SSPLGDDGVL DIDTTISLET TWHAMEDLVS SGLVRSIGIS NYDIFLTRDC LAYSKIKPAV NQIETHPYFQ RDSLVKFCQK
201: HGICVTAHTP LGGAAANAEW FGTVSCLDDQ VLKGLAEKYK KTAAQISLRW GIQRNTVVIP KSSKLERLKE NFQVFDFELS KEDMELIGSI DRKYRTNQPA
301: VFWGIDLYA

Best Arabidopsis Sequence Match ( AT2G21250.1 )
(BLAST)

001: MEITLNSGFK MPIVGLGVWR MEKEGIRDLI LNAIKIGYRH LDCAADYRNE TEVGDALTEA FKTGLVKRED LFITTKLWNS DHGHVIEACK DSLKKLQLDY
101: LDLFLVHFPV ATKHTGVGTT DSALGDDGVL DIDTTISLET TWHDMEKLVS MGLVRSIGIS NYDVFLTRDC LAYSKIKPAV NQIETHPYFQ RDSLVKFCQK
201: HGICVTAHTP LGGATANAEW FGTVSCLDDP VLKDVAEKYK KTVAQVVLRW GIQRKTVVIP KTSKPARLEE NFQVFDFELS KEDMEVIKSM ERKYRTNQPA
301: KFWNIDLYA

Arabidopsis Description

NAD(P)-linked oxidoreductase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.