CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92060	Soybean	cytosol, nucleus	64.07	78.2
VIT_13s0074g00240.t01	Wine grape	cytosol	66.94	64.68
Os04t0405800-01	Rice	nucleus	37.17	59.74
HORVU2Hr1G072140.5	Barley	cytosol	48.25	58.9
KRH20012	Soybean	nucleus	57.7	57.7
KRH32635	Soybean	cytosol	57.29	56.14
GSMUA_Achr6P13420_001	Banana	cytosol, nucleus, plastid	56.47	52.18
EES10724	Sorghum	nucleus	52.98	49.71
TraesCS2D01G289700.2	Wheat	cytosol	50.31	48.61
TraesCS2A01G291700.2	Wheat	nucleus	50.31	48.61
TraesCS2B01G308200.2	Wheat	nucleus	49.9	48.12
Zm00001d003836_P005	Maize	nucleus	49.49	46.08
GSMUA_Achr2P20220_001	Banana	nucleus	53.18	44.73
KRH43401	Soybean	plastid	29.16	43.69
KRH59550	Soybean	plastid	29.57	43.5
KRH13440	Soybean	cytosol	6.16	35.71
KRH57953	Soybean	cytosol	7.19	35.0
GSMUA_Achr10P...	Banana	plastid	36.96	34.62

Protein Annotations

KEGG:00240+2.7.4.22	Gene3D:1.10.10.60	EntrezGene:100791426	MapMan:15.5.20	Gene3D:3.40.1160.10	EMBL:ACUP02006620
InterPro:AceGlu_kinase-like_sf	InterPro:Asp/Glu/Uridylate_kinase	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G201400	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006221
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0033862	GO:GO:0046939	GO:GO:0046940	UniProt:I1LCQ5	InterPro:IPR036393	EnsemblPlants:KRH34715
ProteinID:KRH34715	ProteinID:KRH34715.1	HAMAP:MF_01220_B	PFAM:PF00696	PFAM:PF13837	PANTHER:PTHR42833
PANTHER:PTHR42833:SF3	SUPFAM:SSF53633	UniParc:UPI0002959F02	InterPro:Uridylate_kinase_bac	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:43259372..43262667

Molecular Weight (calculated)

52667.0 Da

IEP (calculated)

8.384

GRAVY (calculated)

-0.418

Length

487 amino acids

Sequence
(BLAST)

001: MATEDYPLLD SPSHGQPHLH ASTRHHFPSS SSSSPTTLPA TAASGTATAD YYPHPSFSDD SAKSNSKRAS AAGSPYYHNK RLKSAADPDP ATDYRKDREE
101: WSDTAIAYLL EAYTEKFNQL NRGNLRGRDW EEVAEAVLER CGGEGKHQKS VEQCKNKIDN LKKRYKVELQ RIGSGGIATS HWHWFKKIEA IVGNSLSVKT
201: VSDDDKAGSS GGGANSPSMA RQTKNRYAPS NATVATNLKP KPASNLKWHR VLFKISGSAL AGNCQNIDPK VAMQIAREVA TACRLGVEVA IVVGGRNFFC
301: GDAWVSATGL DRPTAYQIGM MATVMNSILL QSALEKLGVQ ARVQSTFSMP EVAEPYSRQR AIRHLEKGRV VIFGGVGAGT GNPLFTTDTA AALRASELNA
401: DAVLKGTNVN GVFDCHPRND NITLDHISFR EVVSRGVTSM DMMALAYCEE NGIPVVVFNV LEPGNVSRAL CGDQVGTLID QTGRVEH

Best Arabidopsis Sequence Match ( AT3G10030.1 )
(BLAST)

001: MASCDDDFSL LGDDQSNPNQ HHHHHQVLHH TPYAPRRFNP KPSNQILLPH HQRNGDEDDE NDVVVEASSA FHGHGVNPFT ADENSNPYDD NNAAVDEDED
101: EDLGANRSRI GGVRVEKRQS QEELSDGGTT NGGEITPYGS FKRPRTSSSS AGEYRKDREE WSDAAIACLL DAYSDKFTQL NRGNLRGRDW EEVASSVSER
201: CEKLSKSVEQ CKNKIDNLKK RYKLERHRMS SGGTAASHWP WFKKMEDIVG NSLALKGASD EDRSGSSMGN TVKPARRYPL VTYNPGVQIN NVKSKATSNP
301: RWRRVVLKIS GAALACTGPN NIDPKVINLI AREVAMACRL GVEVAIVVGS RNFFCGSTWV TATGLDRTTA YHISMMASVM NSALLQSSLE KIGVQARLQT
401: AISVQGVGEP YNRQRATRHL DKGRVVIFGG IGATLGNPLL SSDASAALRA IDINAEAVVK GTNVDGVYDC HSQDSNVTFE HISFQDLASR GLTSMDTMAL
501: NFCEENSIPV VVFNFLEAGN ITKALCGEQV GTLIDRSGRG VS

Arabidopsis Description

AT3g10030/T22K18_15 [Source:UniProtKB/TrEMBL;Acc:Q94JR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.