CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32635	Soybean	cytosol	87.68	85.92
VIT_08s0007g04160.t01	Wine grape	cytosol	70.02	59.41
Os04t0405800-01	Rice	nucleus	36.34	58.42
KRH34715	Soybean	nucleus	57.7	57.7
KRG92060	Soybean	cytosol, nucleus	47.23	57.64
PGSC0003DMT400007059	Potato	cytosol	62.22	56.85
Solyc09g008850.2.1	Tomato	cytosol	61.81	56.58
HORVU2Hr1G072140.5	Barley	cytosol	45.59	55.64
AT3G10030.1	Thale cress	cytosol	60.99	54.8
CDY00900	Canola	cytosol	59.96	54.28
CDY60158	Canola	nucleus	59.75	53.59
Bra029812.1-P	Field mustard	nucleus	59.75	53.49
GSMUA_Achr6P13420_001	Banana	cytosol, nucleus, plastid	56.67	52.37
EES10724	Sorghum	nucleus	52.57	49.33
TraesCS2D01G289700.2	Wheat	cytosol	48.87	47.22
TraesCS2B01G308200.2	Wheat	nucleus	48.87	47.13
TraesCS2A01G291700.2	Wheat	nucleus	48.67	47.02
Zm00001d003836_P005	Maize	nucleus	50.1	46.65
GSMUA_Achr2P20220_001	Banana	nucleus	54.21	45.6
KRH59550	Soybean	plastid	28.34	41.69
KRH43401	Soybean	plastid	27.72	41.54
GSMUA_Achr10P...	Banana	plastid	37.58	35.19
KRH13440	Soybean	cytosol	5.54	32.14
KRH57953	Soybean	cytosol	5.54	27.0

Protein Annotations

KEGG:00240+2.7.4.22	Gene3D:1.10.10.60	EntrezGene:100805459	MapMan:15.5.20	Gene3D:3.40.1160.10	EMBL:ACUP02008222
InterPro:AceGlu_kinase-like_sf	InterPro:Asp/Glu/Uridylate_kinase	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G149900	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006221
GO:GO:0008150	GO:GO:0008152	GO:GO:0009041	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0033862	GO:GO:0046939	GO:GO:0046940	InterPro:IPR036393	UniProt:K7LZV4
EnsemblPlants:KRH20012	ProteinID:KRH20012	ProteinID:KRH20012.1	HAMAP:MF_01220_B	PFAM:PF00696	PFAM:PF13837
PANTHER:PTHR42833	PANTHER:PTHR42833:SF1	SUPFAM:SSF53633	UniParc:UPI000233AF47	InterPro:Uridylate_kinase	InterPro:Uridylate_kinase_bac
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:26338007..26343306

Molecular Weight (calculated)

53198.4 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.405

Length

487 amino acids

Sequence
(BLAST)

001: MASCDDDDDF SLLRDDSHHH LHQPYAPHHH HFSPSAVAAS VPPKPVAEAE DFANPFEDDD GSASEKRKEC DEIGEGAASY GFNNKRSKAT PSNGAVSGGA
101: EYRKDREEWS DTAIVCLLEA YTEKFTQLNR GNLRGRDWEE VAAVVSERCE NQSKSVEQCK NKVDNLKKRY KLERHRMSSG CISTSHWPWF KQLEQIVGNS
201: LPAKFSDEDK AVVSAGTTPR QSKRYGVATP STGGQANSMK SKAFSNRWRR VVFKISGAAL TGSDTCNIDP KVAMLVSREV SIASHLGVEV AIVVGGRNFF
301: SGDAWVNATG LERCTAYQVG MMATVMNSIL LQSTLEKMGV QTRVQTSVAM QEFAEPYNRQ RAIRHLEKGR VVIFGGIGFG AGTPLFSTDI AAALRASELN
401: AEAVLKGTNV DGVYDCNSRD NNFTFEHISF RELGSRGVTS MDMSALTFCE ENAIPVVVFN LLEPGNISKA LCGEQVGTLI DQTGAIS

Best Arabidopsis Sequence Match ( AT3G10030.1 )
(BLAST)

001: MASCDDDFSL LGDDQSNPNQ HHHHHQVLHH TPYAPRRFNP KPSNQILLPH HQRNGDEDDE NDVVVEASSA FHGHGVNPFT ADENSNPYDD NNAAVDEDED
101: EDLGANRSRI GGVRVEKRQS QEELSDGGTT NGGEITPYGS FKRPRTSSSS AGEYRKDREE WSDAAIACLL DAYSDKFTQL NRGNLRGRDW EEVASSVSER
201: CEKLSKSVEQ CKNKIDNLKK RYKLERHRMS SGGTAASHWP WFKKMEDIVG NSLALKGASD EDRSGSSMGN TVKPARRYPL VTYNPGVQIN NVKSKATSNP
301: RWRRVVLKIS GAALACTGPN NIDPKVINLI AREVAMACRL GVEVAIVVGS RNFFCGSTWV TATGLDRTTA YHISMMASVM NSALLQSSLE KIGVQARLQT
401: AISVQGVGEP YNRQRATRHL DKGRVVIFGG IGATLGNPLL SSDASAALRA IDINAEAVVK GTNVDGVYDC HSQDSNVTFE HISFQDLASR GLTSMDTMAL
501: NFCEENSIPV VVFNFLEAGN ITKALCGEQV GTLIDRSGRG VS

Arabidopsis Description

AT3g10030/T22K18_15 [Source:UniProtKB/TrEMBL;Acc:Q94JR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.