Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99240 | Soybean | cytosol | 48.28 | 93.33 |
| Solyc05g006160.2.1 | Tomato | mitochondrion | 41.38 | 75.0 |
| VIT_01s0026g00620.t01 | Wine grape | extracellular | 52.59 | 56.48 |
| KRH03355 | Soybean | extracellular | 53.45 | 53.91 |
| KRH57027 | Soybean | extracellular | 52.59 | 53.04 |
| KRH54442 | Soybean | nucleus | 45.69 | 51.46 |
| KRH63474 | Soybean | extracellular, nucleus | 50.86 | 50.43 |
| KRH69786 | Soybean | cytosol | 27.59 | 47.06 |
| KRH05956 | Soybean | extracellular | 37.07 | 43.43 |
| KRH17433 | Soybean | extracellular | 37.07 | 43.43 |
| KRG91811 | Soybean | extracellular | 36.21 | 43.3 |
| KRH34971 | Soybean | extracellular | 34.48 | 41.67 |
| KRH34969 | Soybean | extracellular | 34.48 | 41.67 |
| KRH05955 | Soybean | extracellular | 36.21 | 39.62 |
| KRH51705 | Soybean | extracellular | 33.62 | 39.0 |
| KRH61042 | Soybean | extracellular | 33.62 | 39.0 |
| KRH37871 | Soybean | extracellular | 33.62 | 34.82 |
| KRH07784 | Soybean | cytosol | 36.21 | 31.11 |
| KRH18589 | Soybean | extracellular | 44.83 | 28.57 |
| KRG93396 | Soybean | extracellular | 45.69 | 26.77 |
Protein Annotations
| EMBL:ACUP02005285 | EMBL:BT089459 | EnsemblPlants:KRH45753 | EnsemblPlantsGene:GLYMA_08G291900 | EntrezGene:100305713 | InterPro:GASA |
| PANTHER:PTHR23201 | PANTHER:PTHR23201:SF18 | PFAM:PF02704 | ProteinID:KRH45753 | ProteinID:KRH45753.1 | SEG:seg |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0001B14E20 | UniProt:C6SWB6 | MapMan:11.10.2.1.1 | : |
Description
hypothetical protein
Coordinates
chr8:-:40587580..40589748
Molecular Weight (calculated)
13079.5 Da
IEP (calculated)
9.565
GRAVY (calculated)
-0.113
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNKRKTLLL LLLMAATLFC MPIVSYAVSN VNIQDHLTNI SELVKGPNRR LLSFVDCGER CRVRCSLHSR PKICTRACGT CCMRCRCVPP GTYGNREMCG
101: KCYTHMITHG NKPKCP
101: KCYTHMITHG NKPKCP
001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
Arabidopsis Description
GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.