CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03355	Soybean	extracellular	80.34	81.74
KRH57027	Soybean	extracellular	79.49	80.87
KRH54442	Soybean	nucleus	69.23	78.64
KRG99240	Soybean	cytosol	38.46	75.0
PGSC0003DMT400040298	Potato	extracellular	47.01	61.11
KRH45753	Soybean	extracellular, nucleus	50.43	50.86
KRH34971	Soybean	extracellular	40.17	48.96
KRH69786	Soybean	cytosol	27.35	47.06
KRH34969	Soybean	extracellular	38.46	46.88
KRH05956	Soybean	extracellular	39.32	46.46
KRH17433	Soybean	extracellular	38.46	45.45
KRG91811	Soybean	extracellular	37.61	45.36
KRH51705	Soybean	extracellular	35.04	41.0
KRH61042	Soybean	extracellular	34.19	40.0
KRH05955	Soybean	extracellular	35.04	38.68
KRH37871	Soybean	extracellular	33.33	34.82
KRH07784	Soybean	cytosol	35.04	30.37
KRH18589	Soybean	extracellular	46.15	29.67
KRG93396	Soybean	extracellular	46.15	27.27

Protein Annotations

EMBL:ACUP02002694	EMBL:BT089146	EnsemblPlants:KRH63474	EnsemblPlantsGene:GLYMA_04G179500	EntrezGene:100305516	InterPro:GASA
PANTHER:PTHR23201	PANTHER:PTHR23201:SF18	PFAM:PF02704	ProteinID:KRH63474	ProteinID:KRH63474.1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI000004A1B4	UniProt:C6SVF3	MapMan:11.10.2.1.1	:	:

Description

hypothetical protein

Coordinates

chr4:+:44454537..44455978

Molecular Weight (calculated)

12976.9 Da

IEP (calculated)

7.765

GRAVY (calculated)

-0.259

Length

117 amino acids

Sequence
(BLAST)

001: MAPRVFLVLG MLLMVCLVKV SSDPKREEEI LEEELHFPDN EPLIVRDGNR RLMQDIDCGG LCKTRCSAHS RPNLCTRACG TCCVRCKCVP PGTSGNRELC
101: GTCYTDMTTH GNKTKCP

Best Arabidopsis Sequence Match ( AT5G14920.1 )
(BLAST)

001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP

Arabidopsis Description

GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.