CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99240	Soybean	cytosol	43.69	75.0
KRH63474	Soybean	extracellular, nucleus	78.64	69.23
KRH03355	Soybean	extracellular	72.82	65.22
KRH57027	Soybean	extracellular	70.87	63.48
PGSC0003DMT400040298	Potato	extracellular	43.69	50.0
KRH69786	Soybean	cytosol	31.07	47.06
KRH34971	Soybean	extracellular	42.72	45.83
KRH45753	Soybean	extracellular, nucleus	51.46	45.69
KRG91811	Soybean	extracellular	41.75	44.33
KRH34969	Soybean	extracellular	39.81	42.71
KRH17433	Soybean	extracellular	39.81	41.41
KRH05956	Soybean	extracellular	39.81	41.41
KRH05955	Soybean	extracellular	39.81	38.68
KRH51705	Soybean	extracellular	36.89	38.0
KRH61042	Soybean	extracellular	35.92	37.0
KRH07784	Soybean	cytosol	39.81	30.37
KRH37871	Soybean	extracellular	33.01	30.36
KRH18589	Soybean	extracellular	45.63	25.82
KRG93396	Soybean	extracellular	45.63	23.74

Protein Annotations

EMBL:ACUP02003522	EnsemblPlants:KRH54442	EnsemblPlantsGene:GLYMA_06G185300	EntrezGene:100789576	InterPro:GASA	PANTHER:PTHR23201
PANTHER:PTHR23201:SF18	PFAM:PF02704	ProteinID:KRH54442	ProteinID:KRH54442.1	SEG:seg	UniParc:UPI000296783E
UniProt:K7KVU4	MapMan:11.10.2.1.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:16098321..16099379

Molecular Weight (calculated)

11431.7 Da

IEP (calculated)

5.721

GRAVY (calculated)

-0.598

Length

103 amino acids

Sequence
(BLAST)

001: MMQVSSDPKI EEEILEAEEE LQFPDNEPLI VRDANRRLMQ DMDCGGLCKT RCSAHSRPNL CTRACGTCCV RCKCVPPGTS GNRELCGTCY TDMTTHGNKT
101: KCP

Best Arabidopsis Sequence Match ( AT5G14920.1 )
(BLAST)

001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP

Arabidopsis Description

GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.