CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 5
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031890	Potato	endoplasmic reticulum, extracellular, vacuole	77.56	79.61
Solyc08g083250.2.1	Tomato	extracellular	77.24	79.28
KRH54186	Soybean	endoplasmic reticulum	77.24	77.37
KRH54187	Soybean	nucleus	35.58	75.25
AT5G50400.1	Thale cress	extracellular	71.63	73.16
VIT_17s0000g01400.t01	Wine grape	extracellular, golgi	69.87	72.67
VIT_17s0000g01410.t01	Wine grape	extracellular, golgi, vacuole	70.19	72.52
CDY03409	Canola	extracellular	71.79	72.49
Bra013843.1-P	Field mustard	extracellular	71.31	72.12
CDY34321	Canola	extracellular	71.31	72.12
AT4G24890.1	Thale cress	vacuole	69.71	70.73
KRG99244	Soybean	extracellular	68.11	68.99
KRH45750	Soybean	vacuole	67.47	68.34
KRH70903	Soybean	endoplasmic reticulum, extracellular, golgi, plastid	67.47	65.68
KRH63765	Soybean	mitochondrion	42.63	51.25
KRH39860	Soybean	vacuole	32.69	31.88
KRH23936	Soybean	extracellular	32.53	30.8
KRG89498	Soybean	extracellular, plasma membrane	29.81	28.1
KRG96186	Soybean	extracellular, golgi, vacuole	18.43	26.81
KRH67898	Soybean	extracellular, golgi, vacuole	18.11	26.28
KRH30846	Soybean	cytosol	7.53	25.41
KRH32727	Soybean	endoplasmic reticulum	16.67	24.7
KRH20185	Soybean	nucleus	18.59	24.42
KRH73723	Soybean	extracellular	17.47	24.01
KRH14423	Soybean	extracellular, golgi	17.63	23.91
KRH46137	Soybean	extracellular, plastid, vacuole	17.95	23.88
KRH27195	Soybean	extracellular, plasma membrane, vacuole	17.79	23.67
KRH23858	Soybean	extracellular	17.31	23.28
KRH51772	Soybean	extracellular, golgi, vacuole	17.63	23.21
KRH22146	Soybean	extracellular, golgi	17.47	23.14
KRH51771	Soybean	cytosol	16.19	22.75
KRG96185	Soybean	plastid	17.79	22.65
KRH31582	Soybean	extracellular, mitochondrion, peroxisome, plastid	16.83	22.53
KRH39937	Soybean	extracellular, vacuole	16.67	22.41
KRH67897	Soybean	plastid	17.47	22.2
KRH46686	Soybean	extracellular	19.23	21.94
KRH03620	Soybean	endoplasmic reticulum	17.63	21.48
KRG97331	Soybean	extracellular	18.59	20.28
KRG93588	Soybean	extracellular	18.75	19.93
KRH18439	Soybean	extracellular	6.73	19.81

Protein Annotations

EntrezGene:100814531	Gene3D:3.60.21.10	MapMan:35.1	EMBL:ACUP02002822	InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_05G047900
GO:GO:0003674	GO:GO:0003824	GO:GO:0003993	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0046872	UniProt:I1K0B0	InterPro:IPR008963
InterPro:IPR029052	EnsemblPlants:KRH57229	ProteinID:KRH57229	ProteinID:KRH57229.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149
PFAM:PF14008	PFAM:PF16656	PANTHER:PTHR22953	PANTHER:PTHR22953:SF85	InterPro:Purple_acid_PPase_C_dom	InterPro:Purple_acid_Pase-like_N
InterPro:Purple_acid_Pase_N	SUPFAM:SSF49363	SUPFAM:SSF56300	TMHMM:TMhelix	UniParc:UPI0002960264	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:4268434..4274147

Molecular Weight (calculated)

70400.7 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.313

Length

624 amino acids

Sequence
(BLAST)

001: MKMKIEERVN MNLVLVVAWL VQLNIVYGFA HIHGFGEQPL SRIAIHKAVV SLHSSASITA TPSLLGTKGE DTQWVTVDID YPDPSADDWV GVFSPAKFNA
101: STCPPVNDPK EVIPYICSAP IKYKFMNYSN SYYTKTGKAS LKFQLINQRA DFSFALFSGG LLNPKLVAVS NFISFVNPKV PLYPRLAQGK SWDEMTVTWT
201: SGYDINEATP FVEWGPKGKT QVQSPAGTLT FGRNSMCGSP ARTVGWRDPG FIHTSFLKNL WPNLVYTYQL GHLLSNGSYI WSKKYSFKSS PYPGQDSLQR
301: VIIFGDMGKA ERDGSNEYNA YQPGSLNTTD QLIKDLENID IVFHIGDITY ANGYLSQWDQ FTAQVEPIAS TVPYMIASGN HERDWPNTGS FYSTTDSGGE
401: CGVLAQNMFF VPAENRANFW YAMDYGMFRF CIADTEHDWR EGSEQYKFIE HCLATVDRQK QPWLIFAAHR VLGYSSDFWY GVEGSFEEPM GRESLQRLWQ
501: KYKVDIAFYG HVHNYERTCP IYQNQCVNDE RSHYSGVVNG TIHVVAGGAG SHLSNFSQVT PKWSLYRDYD FGFVKLTAFS HSSLLFEYKK SSDGKVYDSF
601: TISRDYKDVL ACVHDSCEAT TSAT

Best Arabidopsis Sequence Match ( AT5G50400.1 )
(BLAST)

001: MARNFLLVLL WFIVQVSSSH ENGRGDQALS QIDIYAINLA QHHSAFIHVS PLVLGSQGQD TEWVNVVISN PEPSSDDWVG VFSPAKFDSS SCAPTDDKEI
101: APFICSAPVK YMYAKSSPDY MKTGNAVLKF MLINQRADFS FALFTGGLSN PTLVSVSNHV SFINPKAPVY PRLALGKKWD EMTVTWTSGY NIGEAVPFVE
201: WSRKGTRSRR SPAGTLTFTR NSMCGAPART VGWRDPGFIH TASLKDLWPN LKYTYRMGHE LMNGSIVWSK NFTFKSSPYP GQDSLQRVII FGDMGKGERD
301: GSNEYNDYQP GSLNTTDQLI KDLKNIDIVF HIGDITYANG YISQWDQFTA QVEPIASTVP YMVASGNHER DWPDSGSFYG GKDSGGECGV PAETMFDFPA
401: ENKAKFWYSA DYGMFRFCVA DTEHDWREGS EQYQFIERCL ASVDRRAQPW LIFIAHRVLG YSTNDWYGQE GSFEEPMGRE SLQKLWQKYK VDIAFYGHVH
501: NYERTCPIYQ NQCMDNEKSH YSGAFKGTIH VVVGGAGSHL SSFSSLKPKW SIFRDYDYGF VKLTAFDHSS LLFEYKKSSN GAVHDSFTIF REYRDVLACV
601: RDSCEPTTLA S

Arabidopsis Description

PAP27Probable inactive purple acid phosphatase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q5MAU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.