CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 6
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20185	Soybean	nucleus	74.02	79.79
AT5G34850.1	Thale cress	extracellular	71.68	77.26
CDY12397	Canola	extracellular	71.09	76.63
Bra038946.1-P	Field mustard	extracellular	71.09	75.83
CDY47560	Canola	extracellular	70.9	75.62
VIT_11s0118g00240.t01	Wine grape	extracellular, plasma membrane	69.53	73.4
Solyc07g007670.2.1	Tomato	extracellular	68.36	73.38
PGSC0003DMT400020276	Potato	extracellular	67.77	72.75
Solyc12g009800.1.1	Tomato	extracellular	67.19	72.12
Os06t0643900-01	Rice	extracellular	66.99	72.06
GSMUA_Achr3P13260_001	Banana	extracellular	65.62	71.79
HORVU7Hr1G115510.1	Barley	extracellular	66.6	71.49
KXG20468	Sorghum	extracellular	66.41	71.43
GSMUA_Achr1P26030_001	Banana	extracellular	67.38	71.28
TraesCS7A01G517900.1	Wheat	unclear	66.21	71.07
TraesCS7D01G507900.1	Wheat	extracellular	66.21	71.07
TraesCS7B01G434100.1	Wheat	unclear	66.02	70.86
Zm00001d046593_P001	Maize	extracellular	65.82	70.8
TraesCS7B01G434000.1	Wheat	extracellular, plastid	61.91	64.43
KRH51771	Soybean	cytosol	50.98	58.78
KRH39937	Soybean	extracellular, vacuole	53.12	58.62
KRH23858	Soybean	extracellular	52.73	58.19
KRH51772	Soybean	extracellular, golgi, vacuole	52.34	56.54
KRH27195	Soybean	extracellular, plasma membrane, vacuole	50.98	55.65
KRH22146	Soybean	extracellular, golgi	50.0	54.35
KRH30846	Soybean	cytosol	15.23	42.16
KRG96186	Soybean	extracellular, golgi, vacuole	33.59	40.09
KRH67898	Soybean	extracellular, golgi, vacuole	33.59	40.0
KRH73723	Soybean	extracellular	32.23	36.34
KRH32727	Soybean	endoplasmic reticulum	29.88	36.34
KRH46137	Soybean	extracellular, plastid, vacuole	33.2	36.25
KRH14423	Soybean	extracellular, golgi	32.23	35.87
KRG96185	Soybean	plastid	32.23	33.67
KRH67897	Soybean	plastid	32.03	33.4
KRH46686	Soybean	extracellular	31.45	29.43
KRH31582	Soybean	extracellular, mitochondrion, peroxisome, plastid	26.17	28.76
KRG97331	Soybean	extracellular	30.86	27.62
KRG93588	Soybean	extracellular	31.45	27.43
KRH18439	Soybean	extracellular	10.35	25.0
KRH54187	Soybean	nucleus	13.48	23.39
KRG99244	Soybean	extracellular	22.46	18.67
KRH39860	Soybean	vacuole	23.05	18.44
KRH45750	Soybean	vacuole	22.07	18.34
KRH70903	Soybean	endoplasmic reticulum, extracellular, golgi, plastid	22.85	18.25
KRH54186	Soybean	endoplasmic reticulum	21.88	17.98
KRH57229	Soybean	endoplasmic reticulum	21.48	17.63
KRH23936	Soybean	extracellular	21.48	16.69
KRG89498	Soybean	extracellular, plasma membrane	19.92	15.41
KRH63765	Soybean	mitochondrion	14.45	14.26

Protein Annotations

Gene3D:2.60.40.380	Gene3D:3.60.21.10	MapMan:35.1	EntrezGene:547708	EMBL:ACUP02010355	EMBL:AY151271
EMBL:AY151272	EMBL:AY151273	EMBL:AY151274	EMBL:AY151275	InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_17G109400
GO:GO:0003674	GO:GO:0003824	GO:GO:0003993	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787
GO:GO:0046872	EMBL:GQ422778	InterPro:IPR008963	InterPro:IPR029052	EnsemblPlants:KRH03620	ProteinID:KRH03620
ProteinID:KRH03620.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF14008	PFAM:PF16656	PANTHER:PTHR22953
PANTHER:PTHR22953:SF55	InterPro:Purple_acid_PPase_C_dom	InterPro:Purple_acid_Pase-like_N	InterPro:Purple_acid_Pase_N	UniProt:Q6YGT9	SUPFAM:SSF49363
SUPFAM:SSF56300	TMHMM:TMhelix	UniParc:UPI00001D63B3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:8568010..8573209

Molecular Weight (calculated)

59511.5 Da

IEP (calculated)

8.252

GRAVY (calculated)

-0.405

Length

512 amino acids

Sequence
(BLAST)

001: MWLASFRSLL CKCFIPRWLG LCRLIKTTLI PLERRMLLAM LLNLVLASFV FLSFIRDGSA GITSSFIRSE WPAVDIPLDH EAFAVPKGYN APQQVHITQG
101: DYDGKAVIIS WVTTEEPGHS HIQYGTSENK FQTSEEGTVT NYTFHKYKSG YIHHCLIEGL EYETKYYYRI GSGDSSREFW FKTPPKVDPD SPYKFGIIGD
201: LGQTFNSLST LEHYIQSGAQ TVLFVGDLSY ADRYQYNDVG LRWDTWGRFV ERSTAYHPWL WSAGNHEIDY MPYMGEVVPF KNYLYRYTTP YLASNSSSPL
301: WYAVRRASAH IIVLSSYSPF VKYTPQYMWL KEELKRVERE KTPWLIVLMH VPLYNSNGAH YMEGESMRSV FESWFIEYKV DVIFAGHVHA YERSYRYSNV
401: DYNITGGNRY PLPNKSAPVY ITVGDGGNQE GLASRFLDPQ PEYSAFREAS YGHSTLEIKN RTHAIYHWNR NDDGKKVPTD SFVLHNQYWG HNRRRRKLKH
501: FLLKVIDEVA SM

Best Arabidopsis Sequence Match ( AT5G34850.1 )
(BLAST)

001: MNHLVIISVF LSSVLLLYRG ESGITSSFIR SEWPAVDIPL DHHVFKVPKG YNAPQQVHIT QGDYDGKAVI ISWVTPDEPG SSQVHYGAVQ GKYEFVAQGT
101: YHNYTFYKYK SGFIHHCLVS DLEHDTKYYY KIESGESSRE FWFVTPPHVH PDASYKFGII GDMGQTFNSL STLEHYMESG AQAVLFLGDL SYADRYQYND
201: VGVRWDSWGR FVERSTAYQP WLWSAGNHEV DYMPYMGEVT PFRNYLQRYT TPYLASKSSS PLWYAVRRAS AHIIVLSSYS PFVKYTPQWH WLSEELTRVD
301: REKTPWLIVL MHVPIYNSNE AHFMEGESMR AAFEEWFVQH KVDVIFAGHV HAYERSYRIS NVRYNVSSGD RYPVPDKSAP VYITVGDGGN QEGLAGRFTE
401: PQPDYSAFRE ASYGHSTLDI KNRTHAIYHW NRNDDGKKVA TDEFVLHNQY WGKNIRRRKL KKHYIRSVVG GWIAT

Arabidopsis Description

PAP26Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UD94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.