Factsheet for Os08t0503200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
extracellular 2
plasma membrane 3
mitochondrion 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0456700-01	Rice	cytosol	38.05	64.91
Os09t0339800-00	Rice	extracellular, golgi	45.5	62.88
Os04t0472300-01	Rice	extracellular, plasma membrane	53.86	56.62
Os02t0588500-02	Rice	extracellular	54.5	56.61
Os02t0187400-01	Rice	plasma membrane	36.63	40.54
Os02t0187300-01	Rice	endoplasmic reticulum, extracellular	1.8	38.89
Os07t0602800-00	Rice	mitochondrion	11.44	23.86
Os03t0603600-01	Rice	extracellular	11.18	22.25
Os01t0763600-01	Rice	extracellular	10.67	21.23
Os01t0763700-01	Rice	plastid	0.64	3.31

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	EntrezGene:4345965	EMBL:AK065218	EMBL:AK065539	ProteinID:BAD09276.1
ProteinID:BAF24087.1	ProteinID:BAT06136.1	ProteinID:EEE68959.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946
InterPro:IPR030395	EnsemblPlantsGene:Os08g0503200	EnsemblPlants:Os08t0503200-01	PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704
PANTHER:PTHR43620	PANTHER:PTHR43620:SF6	UniProt:Q6ZFH9	SUPFAM:SSF51695	SignalP:SignalP-noTM	UniParc:UPI000023AD8E
RefSeq:XP_015650251.1	SEG:seg	:	:	:	:

Description

PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os08t0503200-01)

Coordinates

chr8:+:24865941..24872043

Molecular Weight (calculated)

83583.5 Da

IEP (calculated)

5.263

GRAVY (calculated)

0.020

Length

778 amino acids

Sequence
(BLAST)

001: MTTSSWGGGG GGGGGAVRLW CCGLLLMLLS GGGGGGGAAA QRPPAYKTLS GNAPIVIAEG GFSGVFPDSS KNAYVFALSS TSGDTVLWCN VQLTKDGVGI
101: CLRDLLMDNC TSISQAYRAG KKAYLVNGEE KKGWFPIDYT MSSLQSVILT QAIWSRTDKF DFAFLPILPV TNVIDLAKPS SVWLNIEHDI FYRQHGLNMT
201: KYILSIPKGG SVQYISSPEL GFLQSISGRV NRKTKLVFRF LDATSSDPSS NQTYGSLLSN LTFIKTVASG IMVPKEYIWP VTTNNYIQPA KSIVRDAHSA
301: GLEIYASDFA NDRIIPYNYS YDPLEEYLHF VGSDNFSVDG VLSEFPLTAA AAIGCFTNLN VSSKTDHGSP LIISHNGASG DYPDCTDLAY QKAVDDGADV
401: IDCSIQMTSD GVPVCMSSIN LFETTNVQRT PFSNRASIFK DIQPTPGIFT FNLTWADISS SDLRPKISSP ESIYYLVRNP VHKNAGNFFR LSDFLTFAKD
501: KDLSGIMIII KNAVFMANSL GFDVVDSVTK ALSDAGYNNQ TTKAKEVMIQ SEDSAVLVNL KQLETKYKLV YTLPSTIGDA SASSLVDVKK FADAVIVDRE
601: SIFPESQGFI MKETNLVKDL RSAGLAIYAQ VFRNEFVSPP WDFFSDVTVE INSYVQSVNI DGIITDFPKT VRRYKMNSCT GLGVNMPSYM NPAEIGGLAQ
701: LLNGSQAQPP ALAPMPVLNS SDVTEPPFPS AAPKNAPGGA ANGSTPAPGA SPSGSQAAAV MRAGILPMVT ALFASLLI

Best Arabidopsis Sequence Match ( AT4G26690.1 )
(BLAST)

001: MRGLLRASSL LLCGVILIQL LAAQIHAQSK KPKSPWPTLT GDPPLVIARG GFSGLFPDSS YDAYNFAILT SVPDAVLWCD VQLTKDALGI CFPDLTMRNS
101: SSIEAVYPTR QKSYPVNGVP TSGWFTIDFS LKDLKDVNLI RGILSRSEKF DGNSNPIMTV QSVSTQMKPS FFWLNVQHDA FYAQHNLSMS SFLVAASKTV
201: LIDFISSPEV NFFKKIAGRF GRNGPSLVFR FLGQDEFEPT TNRTYGSILS NLTFVKTFAS GILVPKSYIL PLDDQQYLLP HTSLVQDAHK AGLEVFVSGF
301: ANDIDIAHDY SFDPVSEYLS FVDNGNFSVD GVLSDFPITA SASLDCFSHV GRNATKQVDF LVITKDGASG DYPGCTDLAY KKAIKDGADV IDCSVQLSSD
401: GTPFCLSSID LGNSTTVSLT AFRNRSTTVP ELGSLGAIYT FSLTWAEIQT LTPAISNPYR VTSLFRNPKQ KNAGKLFSLS DFLSLAKNST SLSGVLISVE
501: NAAYLREEQG LDVVKAVLDT LTQTGYSNST ATKVMIQSTN SSVLVDFKKQ SQYETVYKVE ENIRDILDSA IEDIKKFADA VVIQKLSVFP VAQSFITTQT
601: NVVEKLQKSQ LPVYVELFQN EFLSQPYDFF ADATVEINSY ITGAGINGTI TEFPFTAARY KRNLCLGRKE TIPYMAPAQP GALLTLVSPT AFPPAEAPNP
701: VFTDADVTEP PLPPVTAKAP TSSPGTPSTN AQAPSGQTRI TLSLLLSVFA MVLASLLLL

Arabidopsis Description

GDPDL3Glycerophosphodiester phosphodiesterase GDPDL3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ11]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.