Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- extracellular 4
- plasma membrane 5
- endoplasmic reticulum 3
- vacuole 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0596900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58170.1 | Os03t0596900-01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G202700.1 | Wheat | extracellular, plasma membrane | 67.43 | 63.28 |
| Zm00001d015609_P002 | Maize | plasma membrane | 68.28 | 63.07 |
| TraesCS6A01G174100.1 | Wheat | extracellular, plasma membrane, vacuole | 66.86 | 62.75 |
| TraesCS6D01G163200.1 | Wheat | extracellular, plasma membrane | 66.57 | 62.48 |
| KXG29647 | Sorghum | extracellular, plasma membrane | 66.43 | 62.02 |
| TraesCS1B01G368600.1 | Wheat | extracellular, plasma membrane | 62.45 | 57.69 |
| TraesCS1D01G357000.1 | Wheat | extracellular, plasma membrane | 61.74 | 57.03 |
| TraesCS1A01G353200.1 | Wheat | extracellular, plasma membrane | 61.59 | 56.9 |
| HORVU1Hr1G080970.22 | Barley | extracellular, plasma membrane | 62.45 | 54.06 |
| GSMUA_Achr4P09430_001 | Banana | extracellular | 52.06 | 53.2 |
| VIT_11s0206g00140.t01 | Wine grape | plasma membrane | 56.05 | 52.53 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, peroxisome | 41.68 | 51.49 |
| Bra020384.1-P | Field mustard | extracellular, plasma membrane | 50.92 | 47.35 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 50.5 | 47.33 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 50.5 | 47.14 |
| Bra020395.1-P | Field mustard | plasma membrane | 49.79 | 46.85 |
| Bra002676.1-P | Field mustard | extracellular, golgi, plasma membrane | 50.07 | 46.62 |
| Bra006785.1-P | Field mustard | extracellular, plasma membrane | 49.79 | 45.16 |
| KRH20083 | Soybean | plasma membrane | 47.8 | 43.98 |
| KRH03081 | Soybean | extracellular, plasma membrane | 47.23 | 43.46 |
| CDY12601 | Canola | extracellular | 8.25 | 42.65 |
| Os09t0339800-00 | Rice | extracellular, golgi | 33.29 | 41.56 |
| Solyc02g014490.2.1 | Tomato | unclear | 41.11 | 40.03 |
| PGSC0003DMT400008464 | Potato | cytosol | 41.68 | 39.7 |
| Os02t0588500-02 | Rice | extracellular | 42.25 | 39.65 |
| PGSC0003DMT400008461 | Potato | cytosol | 43.1 | 39.4 |
| Os04t0472300-01 | Rice | extracellular, plasma membrane | 41.39 | 39.32 |
| Solyc02g014530.2.1 | Tomato | unclear | 43.53 | 38.49 |
| Os08t0503200-01 | Rice | plasma membrane | 40.54 | 36.63 |
| Os12t0456700-01 | Rice | cytosol | 22.33 | 34.43 |
| Os02t0187300-01 | Rice | endoplasmic reticulum, extracellular | 1.56 | 30.56 |
| Os07t0602800-00 | Rice | mitochondrion | 12.66 | 23.86 |
| Os03t0603600-01 | Rice | extracellular | 12.66 | 22.76 |
| Os01t0763600-01 | Rice | extracellular | 11.95 | 21.48 |
| Os01t0763700-01 | Rice | plastid | 0.28 | 1.32 |
Protein Annotations
| Gene3D:3.20.20.190 | MapMan:35.1 | ProteinID:BAD15423.1 | ProteinID:BAF08042.1 | ProteinID:BAS77364.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | InterPro:GP_PDE_dom | InterPro:IPR017946 | InterPro:IPR030395 |
| EnsemblPlantsGene:Os02g0187400 | EnsemblPlants:Os02t0187400-01 | PFAM:PF03009 | InterPro:PLC-like_Pdiesterase_TIM-brl | PFscan:PS51704 | PANTHER:PTHR43620 |
| PANTHER:PTHR43620:SF3 | UniProt:Q6ZIM6 | SUPFAM:SSF51695 | SignalP:SignalP-noTM | UniParc:UPI0000358A44 | SEG:seg |
Description
PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os02t0187400-01)
Coordinates
chr2:-:4847753..4852502
Molecular Weight (calculated)
76209.2 Da
IEP (calculated)
5.596
GRAVY (calculated)
0.084
Length
703 amino acids
Sequence
(BLAST)
(BLAST)
001: MGERYPHMFL ILLLFHGAHA ALKDPVQKWQ TLGGQRPLVI ARGGFSGLFP DSSQFSYQFA MSSSLHDVVL YCDLQLSSDG LGFCKTGLTL ENSTLIAEAF
101: PKRAKTYKVN GEEIHGWFAL DFTADELYQN VTLIQDIFSR PSTFDGAMGM FTLEDLVGLK PPHLWVNVEY ALFLQEHKLS AEDYILGLPK DFSVAYISSP
201: EIGFLKNVGA KLKKSNTKLI FRFLREDVAE HTTKKTYGEI LKDLKSVKAF ASGILVPKEY IWPLGKDQYL RLPTSLVKDA HALGLEVFAS GFANDVSMSY
301: NYSFDPSAEY LQYIGNANFS VDGVITDFPP TASGAVACLA NTKGNPLPPP GGDGGRPLII THNGASGVYP GSTDLAYQQA VKDGADIIDC AVRMSKDGVA
401: FCQPSADLST STTASTSFMT KISTVSEIQN KSGIFSFDLT WSEIQTLKPD LLGPYTQAGL KRNPAAKNAG KFVTLPEFLD LAKATNVSGI MVEMEHASFL
501: AKRGLGLVDA VSGALANASY DKEGGHLPEL MVVSDDTSVL AAFKKFPAFR RVLMVDETIS DASAPSVEEI KQFATAVTVG RGSIAQVNGF FLTRFTDVAD
601: RMHAANLTVY VGVLRNEFMN LGFDYWADPI IEIATYAFHV MADGLITEYP ATAATYFRSP CSDLSLNLSY AILPADAGAG GCRVLAAAVA SLFLILLPSH
701: GFH
101: PKRAKTYKVN GEEIHGWFAL DFTADELYQN VTLIQDIFSR PSTFDGAMGM FTLEDLVGLK PPHLWVNVEY ALFLQEHKLS AEDYILGLPK DFSVAYISSP
201: EIGFLKNVGA KLKKSNTKLI FRFLREDVAE HTTKKTYGEI LKDLKSVKAF ASGILVPKEY IWPLGKDQYL RLPTSLVKDA HALGLEVFAS GFANDVSMSY
301: NYSFDPSAEY LQYIGNANFS VDGVITDFPP TASGAVACLA NTKGNPLPPP GGDGGRPLII THNGASGVYP GSTDLAYQQA VKDGADIIDC AVRMSKDGVA
401: FCQPSADLST STTASTSFMT KISTVSEIQN KSGIFSFDLT WSEIQTLKPD LLGPYTQAGL KRNPAAKNAG KFVTLPEFLD LAKATNVSGI MVEMEHASFL
501: AKRGLGLVDA VSGALANASY DKEGGHLPEL MVVSDDTSVL AAFKKFPAFR RVLMVDETIS DASAPSVEEI KQFATAVTVG RGSIAQVNGF FLTRFTDVAD
601: RMHAANLTVY VGVLRNEFMN LGFDYWADPI IEIATYAFHV MADGLITEYP ATAATYFRSP CSDLSLNLSY AILPADAGAG GCRVLAAAVA SLFLILLPSH
701: GFH
001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
Arabidopsis Description
GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.