Factsheet for PGSC0003DMT400008461

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58170.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT5G58170.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g014530.2.1	Tomato	unclear	95.06	91.95
PGSC0003DMT400008464	Potato	cytosol	77.24	80.49
VIT_11s0206g00140.t01	Wine grape	plasma membrane	46.94	48.13
CDY02788	Canola	plasma membrane	45.64	47.11
CDY32730	Canola	plasma membrane	45.51	46.98
Bra020395.1-P	Field mustard	plasma membrane	45.51	46.85
AT5G58050.1	Thale cress	extracellular, plasma membrane	45.77	46.75
AT5G58170.1	Thale cress	extracellular, plasma membrane	45.25	46.4
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	34.33	46.4
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	45.38	46.23
CDY43885	Canola	extracellular, golgi, plasma membrane	44.99	46.07
CDY11831	Canola	extracellular, vacuole	33.81	45.94
CDY02800	Canola	extracellular, plasma membrane, plastid	44.6	45.86
Bra020384.1-P	Field mustard	extracellular, plasma membrane	44.99	45.77
CDY32720	Canola	extracellular, plastid, vacuole	44.73	45.74
GSMUA_Achr4P09430_001	Banana	extracellular	40.18	44.91
CDX88656	Canola	plasma membrane	45.25	44.9
Bra006785.1-P	Field mustard	extracellular, plasma membrane	45.25	44.9
KRH20083	Soybean	plasma membrane	44.21	44.5
KRH03081	Soybean	extracellular, plasma membrane	43.69	43.98
Os02t0187400-01	Rice	plasma membrane	39.4	43.1
PGSC0003DMT400033423	Potato	extracellular	7.28	42.75
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	40.96	42.06
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	40.44	41.52
TraesCS6B01G202700.1	Wheat	extracellular, plasma membrane	40.31	41.39
TraesCS1A01G353200.1	Wheat	extracellular, plasma membrane	40.83	41.26
KXG29647	Sorghum	extracellular, plasma membrane	40.31	41.17
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	40.7	41.13
Zm00001d015609_P002	Maize	plasma membrane	40.44	40.87
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	40.31	40.74
EER90089	Sorghum	extracellular, plasma membrane	39.27	39.68
PGSC0003DMT400033463	Potato	extracellular, plasma membrane	38.49	39.31
HORVU1Hr1G080970.22	Barley	extracellular, plasma membrane	40.18	38.05
PGSC0003DMT400057418	Potato	extracellular	37.06	37.85
CDX71386	Canola	extracellular	9.23	37.57
PGSC0003DMT400033459	Potato	endoplasmic reticulum	11.31	33.59
CDY11832	Canola	cytosol, peroxisome, plastid	6.24	31.37
PGSC0003DMT400010411	Potato	extracellular, golgi	11.05	21.74

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
UniProt:M0ZUL5	PFAM:PF03009	EnsemblPlantsGene:PGSC0003DMG400003271	PGSC:PGSC0003DMG400003271	EnsemblPlants:PGSC0003DMT400008461	InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	SUPFAM:SSF51695	UniParc:UPI000296F127	SEG:seg

Description

Glycerophosphoryl diester phosphodiesterase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003271]

Coordinates

chr2:-:9754769..9759578

Molecular Weight (calculated)

84489.6 Da

IEP (calculated)

5.200

GRAVY (calculated)

-0.100

Length

769 amino acids

Sequence
(BLAST)

001: MIHCTIADPK AAVPVPIPPV PVSVPPLPKH TWLTLHGDEP FVVANGGFSG LYPPQTELAY SQSIIFGKGG TVLLCDLHMS RDGHGFCLSQ LNLQNTTNAA
101: DAFPNRKKTY IVNGKELQGW FALDLTSDEM FDKLIVTQSI FSRTDLFDFL SPYPTDLYLE ENRNALLWIN AEYATFYNQH KLSLLDHMKQ LVETKKDITY
201: ISSPEIGFLK SMGPVVHGLK TKLMFKFPID RNAVEPTTNE PYASLLTKLP MIKTFATGIV VPRELIWPVN KARYLEPSTN LVADAHKQGL EVFAYGFAND
301: NFLPHNYSYD VQREYLQFVD NSKFAVDGVV TDFPTSASTA IACLAGSKNA SRKVPTLIIS ANGANGEYPG STDLAYQKAV NDGADIIDCS VQMTKDGVAF
401: CLPSVDLIPT TTASGPFMSR AAKVDSIQSS MGIFSFDFEW DEILSLKPQM FSEFNGDLIR DPARKNVGKF VTLSDFLEFA KAKAVPGVLI NIENAAYLAN
501: KGLDVVGAVT TALSNATLDK QSTQKVLIMS GESSVLDKFK DIPTYQKVLH IKKQVEFVTN ETALEIKKHA DAVFLHKHSL YTQFRGEGFT LNFTNLIECL
601: HWANVSVYAG TVLNEFQDIY MDYSSDPYSL IHNLIYYGAD GIITQYPGTA NAYTRNLCTG NLESYRIPDI NPGDVITTSL DPKEVEEYKP PPPVHLETKD
701: FVTPPLPAVA AISKDDDKGS ASSNNTNANA PSSPSPPPEQ AQTPSTATAT TINVVAIFFS TMLGLVTLL

Best Arabidopsis Sequence Match ( AT5G58050.1 )
(BLAST)

001: MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA

Arabidopsis Description

GDPDL6Glycerophosphodiester phosphodiesterase GDPDL6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGT9]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.