Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G035250.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58170.1 | HORVU4Hr1G035250.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G357000.1 | Wheat | extracellular, plasma membrane | 82.51 | 88.04 |
| TraesCS1B01G368600.1 | Wheat | extracellular, plasma membrane | 82.51 | 88.04 |
| TraesCS1A01G353200.1 | Wheat | extracellular, plasma membrane | 82.14 | 87.65 |
| Os02t0187400-01 | Rice | plasma membrane | 54.06 | 62.45 |
| Zm00001d015609_P002 | Maize | plasma membrane | 55.91 | 59.66 |
| KXG29647 | Sorghum | extracellular, plasma membrane | 55.05 | 59.36 |
| GSMUA_Achr4P09430_001 | Banana | extracellular | 45.32 | 53.49 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, peroxisome | 37.44 | 53.43 |
| VIT_11s0206g00140.t01 | Wine grape | plasma membrane | 45.44 | 49.2 |
| Bra002676.1-P | Field mustard | extracellular, golgi, plasma membrane | 43.6 | 46.89 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 42.86 | 46.4 |
| Bra020395.1-P | Field mustard | plasma membrane | 42.61 | 46.32 |
| Bra020384.1-P | Field mustard | extracellular, plasma membrane | 42.73 | 45.9 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 42.36 | 45.68 |
| Bra006785.1-P | Field mustard | extracellular, plasma membrane | 42.98 | 45.03 |
| KRH20083 | Soybean | plasma membrane | 41.26 | 43.85 |
| KRH03081 | Soybean | extracellular, plasma membrane | 41.01 | 43.59 |
| CDY12601 | Canola | extracellular | 7.27 | 43.38 |
| HORVU2Hr1G081920.3 | Barley | plasma membrane | 37.68 | 41.13 |
| PGSC0003DMT400008461 | Potato | cytosol | 38.05 | 40.18 |
| HORVU6Hr1G052420.10 | Barley | extracellular, plasma membrane | 37.44 | 39.74 |
| PGSC0003DMT400008464 | Potato | cytosol | 35.59 | 39.16 |
| Solyc02g014530.2.1 | Tomato | unclear | 38.3 | 39.12 |
| Solyc02g014490.2.1 | Tomato | unclear | 34.61 | 38.92 |
| HORVU3Hr1G073870.1 | Barley | extracellular, golgi | 11.82 | 24.55 |
| HORVU2Hr1G087820.3 | Barley | cytosol | 8.99 | 23.62 |
| HORVU2Hr1G032670.2 | Barley | cytosol | 9.48 | 22.65 |
| HORVU6Hr1G074900.1 | Barley | cytosol | 4.43 | 21.69 |
| HORVU1Hr1G024870.4 | Barley | cytosol | 10.96 | 20.23 |
| HORVU6Hr1G024750.1 | Barley | extracellular, vacuole | 1.11 | 10.98 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G080970.22 | EnsemblPlantsGene:HORVU1Hr1G080970 | Gene3D:3.20.20.190 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:GP_PDE_dom | InterPro:IPR017946 |
| InterPro:IPR030395 | InterPro:PLC-like_Pdiesterase_TIM-brl | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF3 | PFAM:PF03009 | PFscan:PS51704 |
| SEG:seg | SUPFAM:SSF51695 | UniParc:UPI000B477471 | UniProt:A0A287GGL1 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr1H:-:526706455..526711661
Molecular Weight (calculated)
88682.1 Da
IEP (calculated)
5.327
GRAVY (calculated)
-0.011
Length
812 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCLPPIHNL FPLVSWVLDP FRPNLLRCAS AFEAWISPTR SAGCSSLTLM GARYPLVFLI LLLLHGTKAA PDPPVPGWLT LSGRRPVVVA RGGFSGLLPE
101: SGQLAYNFAM HSSVCDVVLF CDLQLSSDGV GFCHSSLRLD NSSDIAQSFP NRGSTYQVNG QDVQGWFSLD FKSKELHDIV LSQNILSRPN TFDKEQQLLS
201: LDNVVQSVLA QQGEVHAIWV NIEYNSFFME HGLSSEGYIV GLPKEFPVTH VSSPEFAFLK GLSGKVRSNI KLIFRFLRED LVEPTTKRTY GELLKDLKSI
301: KAFASGILVP KQFIWPQNKD MYLEPSTSLV KDAHALGLEV YASGFANDDP CMSYNYSYDP SAEILQYIDN SEFSVDGVLT DNPPTASAAL VCMAHTKGNP
401: FLFPPVKAGP PPGEGENSTR PLIITHNGAS GVFSDSTDLA YQQAVKDGAD IIDCWVRMSK DGVAFCLGST DLNSSTTAAT TFLGKMTTVN EIQNKSGIFS
501: FDLLWSEIQT LKPNLIGPFA DARLERNPAA KNAGKFVTLP EFLDFAKASN ITGILMGIEH ATYLIARGLD VVDAVSKALV KSGYDKETCK QRVLIQSEDA
601: PVLTAFKSFP KFQRVLTIEF DIRDASKPSV EEILQFANAV KLRRSSAARV NGFFLEGFTD SLVNRLHAGG LQVYVGVLRN EFMNLAFDYW ADPLVEVATD
701: TLSVGADGLV TEFPATAAAF FRSPCSTGQV YMGYTISPAE PGGLLMLAVN GSVPPAPPPA PVLEPQDILQ QQLPVCPNEP MFRTFRCRLA PKEKEKATGK
801: PEYNINLASL DG
101: SGQLAYNFAM HSSVCDVVLF CDLQLSSDGV GFCHSSLRLD NSSDIAQSFP NRGSTYQVNG QDVQGWFSLD FKSKELHDIV LSQNILSRPN TFDKEQQLLS
201: LDNVVQSVLA QQGEVHAIWV NIEYNSFFME HGLSSEGYIV GLPKEFPVTH VSSPEFAFLK GLSGKVRSNI KLIFRFLRED LVEPTTKRTY GELLKDLKSI
301: KAFASGILVP KQFIWPQNKD MYLEPSTSLV KDAHALGLEV YASGFANDDP CMSYNYSYDP SAEILQYIDN SEFSVDGVLT DNPPTASAAL VCMAHTKGNP
401: FLFPPVKAGP PPGEGENSTR PLIITHNGAS GVFSDSTDLA YQQAVKDGAD IIDCWVRMSK DGVAFCLGST DLNSSTTAAT TFLGKMTTVN EIQNKSGIFS
501: FDLLWSEIQT LKPNLIGPFA DARLERNPAA KNAGKFVTLP EFLDFAKASN ITGILMGIEH ATYLIARGLD VVDAVSKALV KSGYDKETCK QRVLIQSEDA
601: PVLTAFKSFP KFQRVLTIEF DIRDASKPSV EEILQFANAV KLRRSSAARV NGFFLEGFTD SLVNRLHAGG LQVYVGVLRN EFMNLAFDYW ADPLVEVATD
701: TLSVGADGLV TEFPATAAAF FRSPCSTGQV YMGYTISPAE PGGLLMLAVN GSVPPAPPPA PVLEPQDILQ QQLPVCPNEP MFRTFRCRLA PKEKEKATGK
801: PEYNINLASL DG
001: MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL
Arabidopsis Description
SVL2SHV3-like 2 [Source:UniProtKB/TrEMBL;Acc:F4HQ30]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.