Factsheet for PGSC0003DMT400008464

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58170.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT5G58170.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g014490.2.1	Tomato	unclear	89.97	91.97
PGSC0003DMT400008461	Potato	cytosol	80.49	77.24
VIT_11s0206g00140.t01	Wine grape	plasma membrane	47.29	46.53
CDY02788	Canola	plasma membrane	46.07	45.64
Bra020395.1-P	Field mustard	plasma membrane	46.07	45.52
CDY32730	Canola	plasma membrane	45.94	45.5
CDY32720	Canola	extracellular, plastid, vacuole	46.34	45.48
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	46.48	45.43
AT5G58050.1	Thale cress	extracellular, plasma membrane	46.34	45.42
CDY43885	Canola	extracellular, golgi, plasma membrane	46.07	45.27
Bra020384.1-P	Field mustard	extracellular, plasma membrane	46.34	45.24
AT5G58170.1	Thale cress	extracellular, plasma membrane	45.94	45.2
CDY02800	Canola	extracellular, plasma membrane, plastid	45.8	45.19
CDY11831	Canola	extracellular, vacuole	34.01	44.35
PGSC0003DMT400033423	Potato	extracellular	7.86	44.27
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	33.6	43.59
CDX88656	Canola	plasma membrane	45.66	43.48
Bra006785.1-P	Field mustard	extracellular, plasma membrane	45.66	43.48
GSMUA_Achr4P09430_001	Banana	extracellular	40.11	43.02
KRH20083	Soybean	plasma membrane	44.44	42.93
KRH03081	Soybean	extracellular, plasma membrane	44.04	42.54
Os02t0187400-01	Rice	plasma membrane	39.7	41.68
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	41.46	40.85
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	41.06	40.45
TraesCS6B01G202700.1	Wheat	extracellular, plasma membrane	40.92	40.32
KXG29647	Sorghum	extracellular, plasma membrane	40.65	39.84
Zm00001d015609_P002	Maize	plasma membrane	40.65	39.42
TraesCS1A01G353200.1	Wheat	extracellular, plasma membrane	39.7	38.5
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	39.7	38.5
EER90089	Sorghum	extracellular, plasma membrane	39.57	38.37
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	39.43	38.24
PGSC0003DMT400033463	Potato	extracellular, plasma membrane	38.48	37.72
PGSC0003DMT400057418	Potato	extracellular	37.67	36.92
CDX71386	Canola	extracellular	9.35	36.51
HORVU1Hr1G080970.22	Barley	extracellular, plasma membrane	39.16	35.59
PGSC0003DMT400033459	Potato	endoplasmic reticulum	11.11	31.66
CDY11832	Canola	cytosol, peroxisome, plastid	5.96	28.76
PGSC0003DMT400010411	Potato	extracellular, golgi	10.57	19.95

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
UniProt:M0ZUL6	PFAM:PF03009	EnsemblPlantsGene:PGSC0003DMG400003273	PGSC:PGSC0003DMG400003273	EnsemblPlants:PGSC0003DMT400008464	InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	SUPFAM:SSF51695	SignalP:SignalP-noTM	UniParc:UPI00029530DF
SEG:seg	:	:	:	:	:

Description

Glycerophosphoryl diester phosphodiesterase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003273]

Coordinates

chr2:-:10048177..10054323

Molecular Weight (calculated)

82369.1 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.195

Length

738 amino acids

Sequence
(BLAST)

001: MTNAKGLYKT SERSNTPDWK KMLKHVLLVC LMIQCTIADT EYKKGTAVPL AKRTWLTLHG DEPVVVANGG FSGLYPSQTD IAFRNVFGKN GTVFLCDLHM
101: SRDGHGFCLS QLNIQNTTNA ADAFPDRRKT YTVNGKELQG WFALDFTSDE MFSKLLVTQS IFSRTDLFDF SSPYPTDLFL EENNNTQVWI NAEYPAFYNQ
201: HNLSLVDQIK QLLEVKKDIS YISSPDIGFL KRMGPVFHGL KTKLMFKFPI DRSTVEPTTN KRYASLLTKL SMIKKFAAGI VVPREYIWPV NRARHLKSST
301: NLVAKAHKQG VQVFAYGFAN DNYLPYNYSY DPQREYLQFV DNSKFAVDGV VTDFAMSAST AIALIITANG ASGDYPGSTD LAYQKAVDDG ADIIDCSVQM
401: TKDGVAFCLP SVDLISTTTA SGPFMSRATK VEALQSSMGI FSFDFTWEEI QSLKPQMFSE FNGELARDPA RKNMGKFVTL SDFLEFAKGK AVPGVLINIE
501: NAAFLAANKD LDIVGAVTIA LSNATLDKQS TQKVLIMSGE SSVLDKFKDI PTYQKVLHIK KKVEFVTNET ALEIKKHADA VFLHKHSLYT QFRGEGFTLN
601: LTNLIECMHW ANISVYAGTV VNEFQDIYMD FNSDPYTLIH NLIYYGADGI ITQYPSTANA YTRNLCTGNQ ESYRIPDINP GDVITYALDP KEVEEYKPPP
701: PEYLETKDFV TPPLPPVAAI AKKNDHGGSS SNSIFSLL

Best Arabidopsis Sequence Match ( AT5G58050.1 )
(BLAST)

001: MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA

Arabidopsis Description

GDPDL6Glycerophosphodiester phosphodiesterase GDPDL6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGT9]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.