Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g00430.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58170.1 | VIT_19s0015g00430.t01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, peroxisome | 48.4 | 63.8 |
| GSMUA_Achr4P09430_001 | Banana | extracellular | 57.47 | 62.65 |
| CDY32730 | Canola | plasma membrane | 61.6 | 62.01 |
| Bra020395.1-P | Field mustard | plasma membrane | 61.2 | 61.45 |
| CDY02788 | Canola | plasma membrane | 60.93 | 61.34 |
| Bra002676.1-P | Field mustard | extracellular, golgi, plasma membrane | 60.53 | 60.13 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 60.0 | 59.76 |
| CDY43885 | Canola | extracellular, golgi, plasma membrane | 59.73 | 59.65 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 59.6 | 59.6 |
| CDY02800 | Canola | extracellular, plasma membrane, plastid | 58.67 | 58.82 |
| Bra020384.1-P | Field mustard | extracellular, plasma membrane | 58.93 | 58.47 |
| CDX88656 | Canola | plasma membrane | 60.4 | 58.45 |
| CDY32720 | Canola | extracellular, plastid, vacuole | 58.53 | 58.38 |
| Bra006785.1-P | Field mustard | extracellular, plasma membrane | 60.0 | 58.06 |
| CDY11831 | Canola | extracellular, vacuole | 43.07 | 57.07 |
| CDY11832 | Canola | cytosol, peroxisome, plastid | 11.47 | 56.21 |
| Os02t0187400-01 | Rice | plasma membrane | 52.53 | 56.05 |
| KRH20083 | Soybean | plasma membrane | 57.07 | 56.02 |
| KRH03081 | Soybean | extracellular, plasma membrane | 55.73 | 54.71 |
| CDX71386 | Canola | extracellular | 13.47 | 53.44 |
| KXG29647 | Sorghum | extracellular, plasma membrane | 53.47 | 53.25 |
| Zm00001d015609_P002 | Maize | plasma membrane | 53.73 | 52.96 |
| TraesCS6B01G202700.1 | Wheat | extracellular, plasma membrane | 52.53 | 52.6 |
| EER90089 | Sorghum | extracellular, plasma membrane | 53.33 | 52.56 |
| TraesCS6A01G174100.1 | Wheat | extracellular, plasma membrane, vacuole | 52.27 | 52.34 |
| TraesCS6D01G163200.1 | Wheat | extracellular, plasma membrane | 52.0 | 52.07 |
| TraesCS1B01G368600.1 | Wheat | extracellular, plasma membrane | 49.73 | 49.01 |
| TraesCS1A01G353200.1 | Wheat | extracellular, plasma membrane | 49.33 | 48.62 |
| TraesCS1D01G357000.1 | Wheat | extracellular, plasma membrane | 48.93 | 48.23 |
| PGSC0003DMT400008464 | Potato | cytosol | 46.53 | 47.29 |
| Solyc02g014490.2.1 | Tomato | unclear | 45.2 | 46.95 |
| PGSC0003DMT400008461 | Potato | cytosol | 48.13 | 46.94 |
| Solyc02g014530.2.1 | Tomato | unclear | 48.93 | 46.16 |
| HORVU1Hr1G080970.22 | Barley | extracellular, plasma membrane | 49.2 | 45.44 |
| VIT_19s0090g01490.t01 | Wine grape | extracellular, plasma membrane, vacuole | 45.2 | 44.78 |
| VIT_17s0000g07450.t01 | Wine grape | extracellular, golgi | 11.6 | 22.03 |
Protein Annotations
| EntrezGene:100247394 | Gene3D:3.20.20.190 | MapMan:35.1 | ProteinID:CCB45221 | ProteinID:CCB45221.1 | UniProt:F6GZ35 |
| EMBL:FN594985 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | InterPro:GP_PDE_dom | InterPro:IPR017946 | InterPro:IPR030395 | PFAM:PF03009 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | PFscan:PS51704 | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF3 | SUPFAM:SSF51695 | SignalP:SignalP-noTM |
| UniParc:UPI00021080E5 | ArrayExpress:VIT_11s0206g00140 | EnsemblPlantsGene:VIT_11s0206g00140 | EnsemblPlants:VIT_11s0206g00140.t01 | RefSeq:XP_010656583.1 | SEG:seg |
Description
No Description!
Coordinates
chr11:+:7470447..7473588
Molecular Weight (calculated)
80487.6 Da
IEP (calculated)
4.804
GRAVY (calculated)
0.024
Length
750 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRCLVLFSL LILSTSAQKT SSQTWQTLNG DEPVVIARGG FSGLFPESSQ FAHQIALSTS LSNVILYCNL QLTKDSVGIC QTDIRLDNST NIAAVFPKSQ
101: KTYTINGENV QGWFALDYTS DQLFNNVTLT QSIYSRPSLF DGTLPLSTVD DAIGIKPPGF WLNVQYDAFY AANKLSVSSY IQKTTRFMGI SYISSPEIGF
201: LKNMNKIINK AKTKLIFRFL DADAVEPTTK QPYSSILKDL SSIKSIASGI LVPKEYIWPL SKDQYLLTPS SVVADAHKQG LEVYASGFAN DMPGSYNYSY
301: DPTAEYLQFV DNSDFSVDGV LTDFPPTASE AIACLAHNKN ATRPSKGKIL VISHNGASGV YPGSTDLAYQ QAVDDGADII DCSVQMSKDG VAFCLNSADL
401: LGSSNAMTSF MSRSTMVSEI QPKSGIFSFD LTWSEIQTLT PQLTSPLPNS GLARNPANKN QGKFITLSDF LDFAKAKAVS GILIDIENAA YLASKKGLSI
501: IDAVTAALSN ATFDKQATQQ VMIQSDDTSV LSKFKNVPGY KRVLSIKEII GDVPKQTVEE IKKFADAVNL PRSSIVTTNG GFTTTFTTVV DELHAANISA
601: YVSVLRNEYV AIAFDFFSDP VVELATYVGR LGIDGVVTDY PKTADAYLRS PCSDLNAKVA YSILPAEAGA LLGLAEPEVL PPAEAPGPPL TVDDVVDPPL
701: PQVSSSNGST ADPAAGPVKA PPRSSGRANA ANMGLHLLGI LLISLLSAGY
101: KTYTINGENV QGWFALDYTS DQLFNNVTLT QSIYSRPSLF DGTLPLSTVD DAIGIKPPGF WLNVQYDAFY AANKLSVSSY IQKTTRFMGI SYISSPEIGF
201: LKNMNKIINK AKTKLIFRFL DADAVEPTTK QPYSSILKDL SSIKSIASGI LVPKEYIWPL SKDQYLLTPS SVVADAHKQG LEVYASGFAN DMPGSYNYSY
301: DPTAEYLQFV DNSDFSVDGV LTDFPPTASE AIACLAHNKN ATRPSKGKIL VISHNGASGV YPGSTDLAYQ QAVDDGADII DCSVQMSKDG VAFCLNSADL
401: LGSSNAMTSF MSRSTMVSEI QPKSGIFSFD LTWSEIQTLT PQLTSPLPNS GLARNPANKN QGKFITLSDF LDFAKAKAVS GILIDIENAA YLASKKGLSI
501: IDAVTAALSN ATFDKQATQQ VMIQSDDTSV LSKFKNVPGY KRVLSIKEII GDVPKQTVEE IKKFADAVNL PRSSIVTTNG GFTTTFTTVV DELHAANISA
601: YVSVLRNEYV AIAFDFFSDP VVELATYVGR LGIDGVVTDY PKTADAYLRS PCSDLNAKVA YSILPAEAGA LLGLAEPEVL PPAEAPGPPL TVDDVVDPPL
701: PQVSSSNGST ADPAAGPVKA PPRSSGRANA ANMGLHLLGI LLISLLSAGY
001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
Arabidopsis Description
GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.