Factsheet for Bra006785.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58170.1	Bra010432.1-P	AT4G26630.1	25387881
AT5G58170.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88656	Canola	plasma membrane	99.23	99.23
CDY11832	Canola	cytosol, peroxisome, plastid	18.84	95.42
Bra020395.1-P	Field mustard	plasma membrane	84.52	87.68
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	81.94	84.11
AT5G58170.1	Thale cress	extracellular, plasma membrane	81.29	84.0
AT5G58050.1	Thale cress	extracellular, plasma membrane	80.52	82.87
Bra020384.1-P	Field mustard	extracellular, plasma membrane	77.03	78.97
VIT_11s0206g00140.t01	Wine grape	plasma membrane	58.06	60.0
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	41.81	56.94
GSMUA_Achr4P09430_001	Banana	extracellular	49.81	56.1
KRH20083	Soybean	plasma membrane	51.35	52.09
KRH03081	Soybean	extracellular, plasma membrane	50.58	51.31
Os02t0187400-01	Rice	plasma membrane	45.16	49.79
KXG29647	Sorghum	extracellular, plasma membrane	48.0	49.4
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	47.48	49.13
Zm00001d015609_P002	Maize	plasma membrane	48.13	49.01
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	47.35	49.0
TraesCS6B01G202700.1	Wheat	extracellular, plasma membrane	46.97	48.6
EER90089	Sorghum	extracellular, plasma membrane	46.71	47.57
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	45.81	46.65
TraesCS1A01G353200.1	Wheat	extracellular, plasma membrane	45.68	46.52
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	45.55	46.39
Bra019073.1-P	Field mustard	extracellular, plasma membrane, plastid	29.81	46.2
PGSC0003DMT400008464	Potato	cytosol	43.48	45.66
PGSC0003DMT400008461	Potato	cytosol	44.9	45.25
Bra004101.1-P	Field mustard	extracellular, plasma membrane, vacuole	43.23	45.09
Solyc02g014490.2.1	Tomato	unclear	41.81	44.88
Bra035244.1-P	Field mustard	plasma membrane	43.35	44.33
Bra026409.1-P	Field mustard	extracellular, plasma membrane, vacuole	43.23	44.25
Bra019092.1-P	Field mustard	extracellular, plasma membrane, vacuole	40.65	43.93
Bra002904.1-P	Field mustard	extracellular, plasma membrane, vacuole	42.97	43.93
Solyc02g014530.2.1	Tomato	unclear	45.03	43.9
Bra034037.1-P	Field mustard	extracellular, vacuole	40.26	43.58
HORVU1Hr1G080970.22	Barley	extracellular, plasma membrane	45.03	42.98
Bra028979.1-P	Field mustard	plasma membrane	41.42	41.91
Bra034040.1-P	Field mustard	extracellular	7.1	40.44
Bra035774.1-P	Field mustard	plasma membrane	38.19	36.23
Bra001790.1-P	Field mustard	plasma membrane	37.94	35.17
Bra035208.1-P	Field mustard	extracellular, golgi, plastid	12.39	35.16
Bra035209.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	39.23	31.54
Bra003814.1-P	Field mustard	golgi	10.97	21.74
Bra015928.1-P	Field mustard	extracellular, golgi, vacuole	10.97	21.63
Bra009316.1-P	Field mustard	extracellular, vacuole	9.94	20.7
Bra003813.1-P	Field mustard	cytosol	10.97	20.63
Bra015910.1-P	Field mustard	endoplasmic reticulum	0.0	0.0

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	EnsemblPlantsGene:Bra006785	EnsemblPlants:Bra006785.1	EnsemblPlants:Bra006785.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
UniProt:M4CRE4	PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3
SUPFAM:SSF51695	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000254037E	SEG:seg	:

Description

AT5G58170 (E=3e-237) SVL5 | SVL5 (SHV3-LIKE 5); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase

Coordinates

chrA03:+:5041536..5045017

Molecular Weight (calculated)

83385.0 Da

IEP (calculated)

4.917

GRAVY (calculated)

0.016

Length

775 amino acids

Sequence
(BLAST)

001: MLRSFIIFSL FLHSCVAAPQ TPTAAAAVPA KKWLTLNGQE PGVVARGGFS GLFPESSASA NAFAISTSSP GLTMLCNLQM TKDGVGICLP DIRLDNSTTI
101: STLFPKAQKT YKVNGQDLKG WFALDYSADT IFSNVSLVQN IFSRPSIFNG QMPISAVEDV LGTKPPKFWL SVQYDSFYVE HKLSAAEYLK TLRFRGITFI
201: SSPEIAFLKS IGMDAGMSKT KLIFEFKDPE AIEPTTNKKY SELLLDLAAI KAFASGVLVP KDYIWPLDSA NYLKPASTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGFITD FPPTASQAIS CLSHQQGNLP KANHALVITQ NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDSADLTTST TAMTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSLKPQIL SPFLAKGGFQ RNPSNKNAGK FMTLADFLEF SKEKAVTGVL INIEANTTFQ
501: KYTFQDNFTD DALFCLQNAA YLASKKGLGI VDTVQSAITK STLDKQLTQK VLIQSDDSSV LSSFAAVPPY TRVLTIDKEI GDAPKPSIDE IKKHAEAVNL
601: KRSSLVTTSK NFATGKTNVV EEMHKGNVSV YVSVLRNEYL SIAFDYFSDP TVEIATFIAG NSVDGVVTEF PVTATRYLRS PCSDLNKEQP YAILPVEAGA
701: LLSVAAKEAQ PPASAPNPPL DARDVIDPPL PPIANIVSAN ASGEAPGHSG TIATTADLGL SLVAILVLGL LFAAE

Best Arabidopsis Sequence Match ( AT5G58170.1 )
(BLAST)

001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV

Arabidopsis Description

GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.