Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58170.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT5G58170.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT5G58170.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86807 | Canola | cytosol | 37.25 | 24.78 |
| CDY42328 | Canola | cytosol | 35.29 | 20.93 |
| Bra006785.1-P | Field mustard | extracellular, plasma membrane | 95.42 | 18.84 |
| CDX88656 | Canola | plasma membrane | 95.42 | 18.84 |
| CDY32730 | Canola | plasma membrane | 84.97 | 17.45 |
| CDY02788 | Canola | plasma membrane | 82.35 | 16.91 |
| CDY43885 | Canola | extracellular, golgi, plasma membrane | 81.05 | 16.51 |
| CDY02800 | Canola | extracellular, plasma membrane, plastid | 79.08 | 16.18 |
| CDY32720 | Canola | extracellular, plastid, vacuole | 76.47 | 15.56 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 75.16 | 15.33 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 73.2 | 14.87 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, peroxisome | 47.06 | 12.65 |
| VIT_11s0206g00140.t01 | Wine grape | plasma membrane | 56.21 | 11.47 |
| GSMUA_Achr4P09430_001 | Banana | extracellular | 50.33 | 11.19 |
| CDX82242 | Canola | cytosol | 30.07 | 10.38 |
| KRH03081 | Soybean | extracellular, plasma membrane | 48.37 | 9.69 |
| CDY12599 | Canola | cytosol | 25.49 | 9.56 |
| KRH20083 | Soybean | plasma membrane | 47.71 | 9.55 |
| CDX86766 | Canola | plasma membrane | 35.95 | 8.69 |
| CDY45656 | Canola | extracellular, golgi, plasma membrane | 35.95 | 8.42 |
| CDY46687 | Canola | extracellular, plasma membrane, vacuole | 37.25 | 7.95 |
| CDX92806 | Canola | extracellular, plasma membrane, vacuole | 36.6 | 7.82 |
| CDY36746 | Canola | plasma membrane | 38.56 | 7.7 |
| CDY61647 | Canola | extracellular, plasma membrane | 37.91 | 7.68 |
| CDY12605 | Canola | extracellular, vacuole | 35.95 | 7.68 |
| CDX89312 | Canola | extracellular, plasma membrane, vacuole | 37.91 | 7.66 |
| CDX94294 | Canola | extracellular, plasma membrane, vacuole | 37.91 | 7.66 |
| CDY13237 | Canola | extracellular, plasma membrane, vacuole | 37.91 | 7.64 |
| CDY58867 | Canola | plasma membrane | 35.95 | 7.62 |
| CDX85815 | Canola | mitochondrion | 14.38 | 7.61 |
| CDY17323 | Canola | plasma membrane | 36.6 | 7.29 |
| CDY29432 | Canola | cytosol, peroxisome | 28.1 | 7.21 |
| CDY11996 | Canola | plasma membrane | 32.68 | 6.47 |
| PGSC0003DMT400008461 | Potato | cytosol | 31.37 | 6.24 |
| Solyc02g014490.2.1 | Tomato | unclear | 28.76 | 6.09 |
| PGSC0003DMT400008464 | Potato | cytosol | 28.76 | 5.96 |
| CDY19634 | Canola | plasma membrane | 28.1 | 5.92 |
| Solyc02g014530.2.1 | Tomato | unclear | 30.72 | 5.91 |
| CDX73068 | Canola | extracellular | 15.03 | 5.82 |
| CDY11071 | Canola | extracellular, golgi | 14.38 | 5.63 |
| CDX68196 | Canola | golgi | 14.38 | 5.54 |
| CDX68195 | Canola | peroxisome | 14.38 | 5.34 |
| CDX96524 | Canola | golgi, mitochondrion, peroxisome, plastid | 14.38 | 5.24 |
| CDY36036 | Canola | plasma membrane | 28.76 | 5.18 |
| CDX69980 | Canola | extracellular, golgi, vacuole | 11.11 | 4.57 |
| CDX99041 | Canola | extracellular | 11.11 | 4.56 |
| CDY14478 | Canola | plasma membrane | 32.68 | 3.81 |
| CDY60415 | Canola | plasma membrane | 26.8 | 3.46 |
| CDX85814 | Canola | extracellular | 3.27 | 2.55 |
| CDY11831 | Canola | extracellular, vacuole | 8.5 | 2.3 |
| CDY72472 | Canola | mitochondrion | 0.65 | 0.27 |
| CDY60410 | Canola | extracellular | 0.0 | 0.0 |
| CDY71959 | Canola | extracellular, plastid, vacuole | 0.0 | 0.0 |
| CDX71386 | Canola | extracellular | 0.0 | 0.0 |
| CDY12601 | Canola | extracellular | 0.0 | 0.0 |
| CDX86765 | Canola | extracellular, mitochondrion, vacuole | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:A0A078FFR0 | UniProt:A0A078FFR0 | EnsemblPlants:CDY11832 | ProteinID:CDY11832 | ProteinID:CDY11832.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00060656001 | InterPro:IPR017946 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF3 | SUPFAM:SSF51695 | TMHMM:TMhelix | UniParc:UPI0004EE0CD6 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g12580DBnaC03g12580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFR0]
Coordinates
chrLK032015:+:11500..12358
Molecular Weight (calculated)
15868.9 Da
IEP (calculated)
4.208
GRAVY (calculated)
0.280
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKGNVSVYV SVLRNEYLSI AFDYFSDPTV EIATFIAGNG VDGVVTEFPV TATRYLRSPC SDLNKEQPYA ILPAEAGALL SVAAKEAQPP ASAPNPPLDA
101: RDVIDPPLPP IANIVSANAS GEPPGHSGTI AATANLGLSL LTILVLGLLF AAE
101: RDVIDPPLPP IANIVSANAS GEPPGHSGTI AATANLGLSL LTILVLGLLF AAE
001: MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA
Arabidopsis Description
GDPDL6Glycerophosphodiester phosphodiesterase GDPDL6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGT9]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.