CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
peroxisome 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11071	Canola	extracellular, golgi	80.62	59.59
CDX68196	Canola	golgi	79.58	57.93
CDX68195	Canola	peroxisome	81.31	57.04
CDX73068	Canola	extracellular	73.01	53.42
CDX96524	Canola	golgi, mitochondrion, peroxisome, plastid	73.36	50.48
KRH56805	Soybean	nucleus	64.36	47.45
KRH03139	Soybean	extracellular, golgi	63.67	47.42
VIT_17s0000g07450.t01	Wine grape	extracellular, golgi	62.98	46.08
CDX99041	Canola	extracellular	58.13	45.04
CDX69980	Canola	extracellular, golgi, vacuole	57.79	44.89
PGSC0003DMT400010411	Potato	extracellular, golgi	59.17	43.73
Solyc06g069470.2.1	Tomato	extracellular	59.17	43.73
GSMUA_Achr6P34970_001	Banana	extracellular, plasma membrane	58.48	43.44
TraesCS3B01G333600.1	Wheat	extracellular, golgi	56.75	41.94
TraesCS3D01G299100.1	Wheat	extracellular, golgi	56.75	41.94
Os01t0763600-01	Rice	extracellular	56.4	41.69
Zm00001d012677_P012	Maize	golgi	56.4	41.69
TraesCS3A01G302700.1	Wheat	extracellular, golgi	56.4	41.69
HORVU3Hr1G073870.1	Barley	extracellular, golgi	56.4	41.69
EES01511	Sorghum	extracellular, golgi	56.4	41.69
CDY42328	Canola	cytosol	13.15	14.73
CDY11832	Canola	cytosol, peroxisome, plastid	7.61	14.38
CDX86807	Canola	cytosol	10.73	13.48
CDY12599	Canola	cytosol	17.65	12.5
CDX82242	Canola	cytosol	16.61	10.84
CDX85814	Canola	extracellular	6.92	10.2
CDY29432	Canola	cytosol, peroxisome	18.69	9.06
CDY12605	Canola	extracellular, vacuole	18.69	7.54
CDY45656	Canola	extracellular, golgi, plasma membrane	16.95	7.5
CDX86766	Canola	plasma membrane	16.26	7.42
CDY13237	Canola	extracellular, plasma membrane, vacuole	19.03	7.25
CDY19634	Canola	plasma membrane	17.99	7.16
CDY61647	Canola	extracellular, plasma membrane	18.34	7.02
CDY32730	Canola	plasma membrane	17.99	6.98
CDY02788	Canola	plasma membrane	17.65	6.85
CDX88656	Canola	plasma membrane	17.99	6.71
CDY02800	Canola	extracellular, plasma membrane, plastid	17.3	6.68
CDY36746	Canola	plasma membrane	17.65	6.66
CDY43885	Canola	extracellular, golgi, plasma membrane	17.3	6.66
CDY32720	Canola	extracellular, plastid, vacuole	17.3	6.65
CDY11996	Canola	plasma membrane	17.65	6.6
CDX92806	Canola	extracellular, plasma membrane, vacuole	16.26	6.56
CDY46687	Canola	extracellular, plasma membrane, vacuole	16.26	6.56
CDY17323	Canola	plasma membrane	17.3	6.51
CDY58867	Canola	plasma membrane	16.26	6.51
CDX94294	Canola	extracellular, plasma membrane, vacuole	16.26	6.21
CDX89312	Canola	extracellular, plasma membrane, vacuole	16.26	6.21
CDY36036	Canola	plasma membrane	16.61	5.65
CDY14478	Canola	plasma membrane	19.38	4.26
CDY60415	Canola	plasma membrane	16.95	4.13
CDY72472	Canola	mitochondrion	4.84	3.72
CDY11831	Canola	extracellular, vacuole	4.15	2.12
CDX86765	Canola	extracellular, mitochondrion, vacuole	0.0	0.0
CDX71386	Canola	extracellular	0.0	0.0
Os01t0763700-01	Rice	plastid	0.0	0.0
CDY71959	Canola	extracellular, plastid, vacuole	0.0	0.0
CDY60410	Canola	extracellular	0.0	0.0
CDY12601	Canola	extracellular	0.0	0.0

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:A0A078D9A6	EnsemblPlants:CDX85815	ProteinID:CDX85815	ProteinID:CDX85815.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:GP_PDE_dom	EnsemblPlantsGene:GSBRNA2T00143584001	InterPro:IPR017946	InterPro:IPR030395	PFAM:PF03009
InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF5	SUPFAM:SSF51695	UniParc:UPI0004EE1D16
SEG:seg	:	:	:	:	:

Description

BnaC06g23190D

Coordinates

chrLK031843:+:26322..28874

Molecular Weight (calculated)

34026.9 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.321

Length

289 amino acids

Sequence
(BLAST)

001: MSIRNYLIKL KFIKYQKYIY GYKYILKKTN VSLRVTHSYS FRDQQYNGKY PIITFEEFIT IARDAPRVVS IYPEIKNSVL INQHVKWPGG KRFEDKVVET
101: LKKYGYGGSY LSKKWLKRPL FIQSFAPSSL VYISNLIDSP KVLLIDDVTV LTEDTNQTYA EITSDVYFNY IKQYVVGIGP WKDTVVPVIT ITYKLPQIWS
201: KELMHIIYRS VHPYTYRNEN EFLHLNFSQD PYKEYEYWIN EIGVDGLFND FTGSLHNYQE WTSPLSETSK SPRQLLSQIA SLVLPYAKA

Best Arabidopsis Sequence Match ( AT1G74210.1 )
(BLAST)

001: MILTRCLPLI WLSLLTVCAA GRTLHPLPVK GPKTVKLQLQ TSRPYNIAHR GSNGEIPEET TAAYLKAIEE GTDFIETDIL SSKDGVLICF HDCILDETTN
101: VASHKEFADR KRTYDVQGFN ITGFFTFDFT LKELKQLRIK QRYAFRDQQY NGMYPIITFE EFLTIARDAP RVVGIYPEIK NPVLMNQHVK WPGGKKFEDK
201: VVETLKKYGY GGSYLSKKWL KKPLFIQSFA PTSLVYISNL TDSPKVLLID DVTMPTQDTN QTYAEITSDA YFEYIKQYVV GIGPWKDTIV PVNNNYVLAP
301: TDLVKRAHAH NLQVHPYTYR NEHEFLHYNF SQDPYKEYDY WINEIGVDGL FTDFTGSLHN FQEWTSPLPD TSKSPRQLLS QIASLVLPYA KA

Arabidopsis Description

GDPD5GDPD5 [Source:UniProtKB/TrEMBL;Acc:A0A178W3R5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.