Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58170.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT5G58170.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT5G58170.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002676.1-P | Field mustard | extracellular, golgi, plasma membrane | 97.74 | 97.22 |
| CDY32730 | Canola | plasma membrane | 85.62 | 86.31 |
| CDY02788 | Canola | plasma membrane | 85.09 | 85.77 |
| CDX71386 | Canola | extracellular | 21.44 | 85.19 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 84.15 | 84.27 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 82.56 | 82.34 |
| CDX88656 | Canola | plasma membrane | 84.69 | 82.06 |
| CDY11832 | Canola | cytosol, peroxisome, plastid | 16.51 | 81.05 |
| CDY02800 | Canola | extracellular, plasma membrane, plastid | 80.69 | 81.02 |
| CDY32720 | Canola | extracellular, plastid, vacuole | 80.83 | 80.72 |
| CDY11831 | Canola | extracellular, vacuole | 60.45 | 80.21 |
| VIT_11s0206g00140.t01 | Wine grape | plasma membrane | 59.65 | 59.73 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, peroxisome | 43.01 | 56.77 |
| GSMUA_Achr4P09430_001 | Banana | extracellular | 50.33 | 54.94 |
| KRH20083 | Soybean | plasma membrane | 52.86 | 51.96 |
| KRH03081 | Soybean | extracellular, plasma membrane | 52.06 | 51.18 |
| PGSC0003DMT400008464 | Potato | cytosol | 45.27 | 46.07 |
| CDY72472 | Canola | mitochondrion | 22.9 | 45.74 |
| Solyc02g014490.2.1 | Tomato | unclear | 43.54 | 45.29 |
| PGSC0003DMT400008461 | Potato | cytosol | 46.07 | 44.99 |
| CDY61647 | Canola | extracellular, plasma membrane | 44.87 | 44.64 |
| CDY13237 | Canola | extracellular, plasma membrane, vacuole | 45.01 | 44.53 |
| CDX94294 | Canola | extracellular, plasma membrane, vacuole | 44.74 | 44.39 |
| CDX89312 | Canola | extracellular, plasma membrane, vacuole | 44.61 | 44.25 |
| Solyc02g014530.2.1 | Tomato | unclear | 46.6 | 44.03 |
| CDY45656 | Canola | extracellular, golgi, plasma membrane | 38.22 | 43.95 |
| CDY46687 | Canola | extracellular, plasma membrane, vacuole | 41.94 | 43.93 |
| CDY12605 | Canola | extracellular, vacuole | 41.68 | 43.72 |
| CDX92806 | Canola | extracellular, plasma membrane, vacuole | 41.28 | 43.3 |
| CDY17323 | Canola | plasma membrane | 43.94 | 42.97 |
| CDY29432 | Canola | cytosol, peroxisome | 33.42 | 42.11 |
| CDY19634 | Canola | plasma membrane | 39.81 | 41.18 |
| CDY12599 | Canola | cytosol | 22.37 | 41.18 |
| CDY36746 | Canola | plasma membrane | 41.81 | 40.99 |
| CDY71959 | Canola | extracellular, plastid, vacuole | 17.71 | 40.55 |
| CDY11996 | Canola | plasma membrane | 41.01 | 39.84 |
| CDY58867 | Canola | plasma membrane | 37.82 | 39.34 |
| CDX82242 | Canola | cytosol | 22.64 | 38.37 |
| CDX86807 | Canola | cytosol | 11.72 | 38.26 |
| CDY60410 | Canola | extracellular | 6.92 | 38.24 |
| CDY12601 | Canola | extracellular | 6.66 | 36.76 |
| CDY42328 | Canola | cytosol | 12.52 | 36.43 |
| CDX86766 | Canola | plasma membrane | 30.63 | 36.33 |
| CDY36036 | Canola | plasma membrane | 39.81 | 35.22 |
| CDY14478 | Canola | plasma membrane | 43.01 | 24.58 |
| CDY60415 | Canola | plasma membrane | 38.35 | 24.28 |
| CDX86765 | Canola | extracellular, mitochondrion, vacuole | 5.06 | 22.89 |
| CDY11071 | Canola | extracellular, golgi | 11.19 | 21.48 |
| CDX69980 | Canola | extracellular, golgi, vacuole | 10.52 | 21.24 |
| CDX68196 | Canola | golgi | 11.19 | 21.16 |
| CDX73068 | Canola | extracellular | 11.05 | 21.01 |
| CDX68195 | Canola | peroxisome | 11.45 | 20.87 |
| CDX96524 | Canola | golgi, mitochondrion, peroxisome, plastid | 11.58 | 20.71 |
| CDX99041 | Canola | extracellular | 10.12 | 20.38 |
| CDX85814 | Canola | extracellular | 5.06 | 19.39 |
| CDX85815 | Canola | mitochondrion | 6.66 | 17.3 |
Protein Annotations
| Gene3D:3.20.20.190 | MapMan:35.1 | GO:A0A078HZ50 | UniProt:A0A078HZ50 | EnsemblPlants:CDY43885 | ProteinID:CDY43885 |
| ProteinID:CDY43885.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0008081 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | InterPro:GP_PDE_dom |
| EnsemblPlantsGene:GSBRNA2T00077447001 | InterPro:IPR017946 | InterPro:IPR030395 | PFAM:PF03009 | InterPro:PLC-like_Pdiesterase_TIM-brl | PFscan:PS51704 |
| PANTHER:PTHR43620 | PANTHER:PTHR43620:SF3 | SUPFAM:SSF51695 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EF34BD |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g33580DBnaC09g33580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ50]
Coordinates
chrLK032571:+:219895..223764
Molecular Weight (calculated)
80101.5 Da
IEP (calculated)
5.280
GRAVY (calculated)
0.036
Length
751 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRFLILFSL FIHSCVAAPK APAAAAALPT KKWLTLNGQE PGVVARGGIS GLFPESCALA NDLAISSSSP GLTILCNLQM TNDGAGICLP DIRLDNATTI
101: PTLFPKGQKT YKVNGQDLKG WFALDYSADT IFSNVSLVQN IYSRPSIFDG QMPISAVEDV LGIKPPKFWL SVQNDAFYME HKLSPAEYLR SLGFRGITFI
201: SSPEIGFLKS IGRDAVMSKT KLIFEFKDPE AMEPTTNKKY SEILQNLAAI KAFASGVLVP KGYIWPIDSA KYLKPATTLV ADAHKAGLEV YASGFANDMP
301: ASFNYSYDPS AEYLQFVDNG QFSVDGFITD FPPTASQAIT CFSHQKGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVE DGADVIDCSV QMSKDGIAFC
401: HDSADLTAST TAMATFMSRA TSVPEIQPTN GVFSYDLTWA EIQSLKPQIQ SPFITKVGIT RNPANKNAGK FVTLDDFLKF SKEKAVTGVL NAAYLASKKG
501: LGIVDAVKSA LTKSTLDKQT TQRVLIQSDD SSVLAGFEAV PPYTRVLSID KEIGDAPKAS VDEIKKHADA VNILRSSLVT ISGSFAAGKT NVVEEMHKGN
601: ISVYVSVLRN EYISIAFDYF SDPTVEFATF IAGNGVDGVI TEFPATATRY LRSPCSDLDK EQPYAILPAE AGSLISVANK EAQPPASAPS PPLDAKDVID
701: PPLPPVANMA ANNATGATPN APGHSGSIAT TANLCLSLLA ILAMGLLFAT D
101: PTLFPKGQKT YKVNGQDLKG WFALDYSADT IFSNVSLVQN IYSRPSIFDG QMPISAVEDV LGIKPPKFWL SVQNDAFYME HKLSPAEYLR SLGFRGITFI
201: SSPEIGFLKS IGRDAVMSKT KLIFEFKDPE AMEPTTNKKY SEILQNLAAI KAFASGVLVP KGYIWPIDSA KYLKPATTLV ADAHKAGLEV YASGFANDMP
301: ASFNYSYDPS AEYLQFVDNG QFSVDGFITD FPPTASQAIT CFSHQKGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVE DGADVIDCSV QMSKDGIAFC
401: HDSADLTAST TAMATFMSRA TSVPEIQPTN GVFSYDLTWA EIQSLKPQIQ SPFITKVGIT RNPANKNAGK FVTLDDFLKF SKEKAVTGVL NAAYLASKKG
501: LGIVDAVKSA LTKSTLDKQT TQRVLIQSDD SSVLAGFEAV PPYTRVLSID KEIGDAPKAS VDEIKKHADA VNILRSSLVT ISGSFAAGKT NVVEEMHKGN
601: ISVYVSVLRN EYISIAFDYF SDPTVEFATF IAGNGVDGVI TEFPATATRY LRSPCSDLDK EQPYAILPAE AGSLISVANK EAQPPASAPS PPLDAKDVID
701: PPLPPVANMA ANNATGATPN APGHSGSIAT TANLCLSLLA ILAMGLLFAT D
001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
Arabidopsis Description
GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.