Factsheet for AT5G58050.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane

Predictor Summary:

extracellular 6
golgi 5
endoplasmic reticulum 5
plastid 2
plasma membrane 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G58170.1	Thale cress	extracellular, plasma membrane	91.1	91.47
CDY43885	Canola	extracellular, golgi, plasma membrane	82.34	82.56
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	82.47	82.25
Bra006785.1-P	Field mustard	extracellular, plasma membrane	82.87	80.52
CDX88656	Canola	plasma membrane	82.87	80.52
CDY11832	Canola	cytosol, peroxisome, plastid	14.87	73.2
VIT_11s0206g00140.t01	Wine grape	plasma membrane	59.76	60.0
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	42.76	56.59
GSMUA_Achr4P09430_001	Banana	extracellular	51.53	56.4
KRH20083	Soybean	plasma membrane	54.32	53.53
KRH03081	Soybean	extracellular, plasma membrane	53.12	52.36
Os02t0187400-01	Rice	plasma membrane	47.14	50.5
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	48.87	49.13
Zm00001d015609_P002	Maize	plasma membrane	49.54	49.01
KXG29647	Sorghum	extracellular, plasma membrane	48.87	48.87
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	48.61	48.87
TraesCS6B01G202700.1	Wheat	extracellular, plasma membrane	48.47	48.73
EER90089	Sorghum	extracellular, plasma membrane	47.14	46.65
PGSC0003DMT400008464	Potato	cytosol	45.42	46.34
PGSC0003DMT400008461	Potato	cytosol	46.75	45.77
Solyc02g014490.2.1	Tomato	unclear	43.82	45.71
AT4G26690.1	Thale cress	extracellular, vacuole	45.95	45.59
TraesCS1A01G353200.1	Wheat	extracellular, plasma membrane	45.95	45.47
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	45.95	45.47
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	45.68	45.2
Solyc02g014530.2.1	Tomato	unclear	47.28	44.78
AT1G66970.2	Thale cress	plasma membrane	46.22	44.33
AT5G55480.1	Thale cress	plasma membrane	45.02	44.26
HORVU1Hr1G080970.22	Barley	extracellular, plasma membrane	45.68	42.36
AT3G20520.1	Thale cress	plasma membrane	39.18	40.47
AT1G66980.2	Thale cress	plasma membrane	43.82	28.77
AT1G74210.1	Thale cress	extracellular	11.29	21.68
AT5G08030.2	Thale cress	golgi	10.09	19.64

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	EntrezGene:835917	ProteinID:AED96991.1	ArrayExpress:AT5G58050	EnsemblPlantsGene:AT5G58050
RefSeq:AT5G58050	TAIR:AT5G58050	RefSeq:AT5G58050-TAIR-G	EnsemblPlants:AT5G58050.1	TAIR:AT5G58050.1	EMBL:AY074302
Unigene:At.29299	ProteinID:BAB10996.1	EMBL:BT001948	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0006071	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150
GO:GO:0008152	GO:GO:0008889	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0031225	GO:GO:0048046	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395	RefSeq:NP_200613.2
PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PO:PO:0001016	PO:PO:0001017	PO:PO:0001185	PO:PO:0007611
PO:PO:0007616	PO:PO:0009009	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	UniProt:Q9FGT9
SUPFAM:SSF51695	Symbol:SVL4	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000000BD5E	SEG:seg

Description

GDPDL6Glycerophosphodiester phosphodiesterase GDPDL6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGT9]

Coordinates

chr5:-:23494249..23497601

Molecular Weight (calculated)

80906.3 Da

IEP (calculated)

5.418

GRAVY (calculated)

-0.016

Length

753 amino acids

Sequence
(BLAST)

001: MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.