Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G26690.1 | Thale cress | extracellular, vacuole | 72.87 | 75.36 |
| AT5G55480.1 | Thale cress | plasma membrane | 67.77 | 69.45 |
| KRH73850 | Soybean | endoplasmic reticulum | 55.29 | 57.64 |
| PGSC0003DMT400033423 | Potato | extracellular | 9.55 | 57.25 |
| KRH14296 | Soybean | endoplasmic reticulum | 54.65 | 56.9 |
| VIT_19s0090g01490.t01 | Wine grape | extracellular, plasma membrane, vacuole | 53.63 | 55.61 |
| KRH46281 | Soybean | extracellular, golgi, plasma membrane | 52.87 | 54.53 |
| Solyc12g014570.1.1 | Tomato | nucleus | 51.97 | 54.33 |
| Solyc07g065120.2.1 | Tomato | extracellular | 52.1 | 54.32 |
| PGSC0003DMT400057418 | Potato | extracellular | 51.72 | 53.92 |
| KRH46282 | Soybean | extracellular, plasma membrane | 52.1 | 53.75 |
| KRG98625 | Soybean | extracellular | 49.43 | 53.74 |
| PGSC0003DMT400033463 | Potato | extracellular, plasma membrane | 51.21 | 53.39 |
| KRH46279 | Soybean | extracellular | 48.92 | 52.82 |
| AT1G66980.2 | Thale cress | plasma membrane | 75.92 | 51.96 |
| KRG98622 | Soybean | extracellular, golgi, plasma membrane | 47.9 | 50.2 |
| GSMUA_Achr8P25690_001 | Banana | plasma membrane | 48.15 | 49.74 |
| KRH46280 | Soybean | cytosol | 16.56 | 49.43 |
| EES05342 | Sorghum | plasma membrane | 46.75 | 48.74 |
| TraesCS6A01G200600.1 | Wheat | golgi | 46.37 | 48.66 |
| Zm00001d050917_P002 | Maize | plasma membrane | 46.5 | 48.47 |
| TraesCS2D01G332500.1 | Wheat | golgi | 45.86 | 48.39 |
| TraesCS2A01G330200.1 | Wheat | extracellular, plasma membrane, vacuole | 45.86 | 48.39 |
| TraesCS6D01G189300.1 | Wheat | unclear | 45.99 | 48.33 |
| TraesCS6B01G226700.2 | Wheat | golgi | 45.99 | 48.33 |
| PGSC0003DMT400033459 | Potato | endoplasmic reticulum | 15.92 | 48.26 |
| GSMUA_AchrUn_... | Banana | extracellular | 10.06 | 48.17 |
| HORVU2Hr1G081920.3 | Barley | plasma membrane | 45.61 | 48.12 |
| EES10974 | Sorghum | golgi | 45.86 | 48.06 |
| TraesCS2B01G352000.1 | Wheat | extracellular, plasma membrane, vacuole | 45.48 | 47.98 |
| GSMUA_Achr9P12610_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 48.03 | 47.96 |
| Zm00001d017036_P002 | Maize | plasma membrane | 46.88 | 47.67 |
| HORVU6Hr1G052420.10 | Barley | extracellular, plasma membrane | 46.37 | 47.58 |
| GSMUA_Achr1P16520_001 | Banana | extracellular, plasma membrane | 45.1 | 47.14 |
| AT3G20520.1 | Thale cress | plasma membrane | 43.69 | 47.05 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 44.33 | 46.22 |
| TraesCS7A01G243900.3 | Wheat | golgi | 44.84 | 45.77 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 43.69 | 45.73 |
| TraesCS7B01G147500.1 | Wheat | unclear | 44.2 | 44.95 |
| KXG36695 | Sorghum | plasma membrane | 44.08 | 44.65 |
| Zm00001d025670_P001 | Maize | mitochondrion | 8.66 | 44.44 |
| Zm00001d052875_P001 | Maize | mitochondrion | 43.18 | 43.69 |
| Zm00001d022153_P006 | Maize | extracellular, mitochondrion | 43.06 | 43.5 |
| TraesCS7D01G242500.1 | Wheat | golgi, plastid, unclear | 44.46 | 43.09 |
| GSMUA_Achr3P03920_001 | Banana | cytosol | 43.31 | 43.04 |
| Zm00001d031412_P001 | Maize | extracellular | 40.0 | 42.15 |
| OQU80956 | Sorghum | cytosol | 43.95 | 38.98 |
| Os02t0187300-01 | Rice | endoplasmic reticulum, extracellular | 1.66 | 36.11 |
| AT1G74210.1 | Thale cress | extracellular | 11.34 | 22.7 |
| AT5G08030.2 | Thale cress | golgi | 10.32 | 20.93 |
Protein Annotations
| Gene3D:3.20.20.190 | MapMan:35.1 | EntrezGene:843015 | ProteinID:AEE34580.1 | ArrayExpress:AT1G66970 | EnsemblPlantsGene:AT1G66970 |
| RefSeq:AT1G66970 | TAIR:AT1G66970 | RefSeq:AT1G66970-TAIR-G | EnsemblPlants:AT1G66970.2 | TAIR:AT1G66970.2 | Unigene:At.27516 |
| UniProt:F4HQ30 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008889 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016787 | GO:GO:0019725 | GO:GO:0030643 | GO:GO:0031225 | GO:GO:0046658 | GO:GO:0048046 |
| InterPro:GP_PDE_dom | InterPro:IPR017946 | InterPro:IPR030395 | RefSeq:NP_001185333.1 | PFAM:PF03009 | InterPro:PLC-like_Pdiesterase_TIM-brl |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51704 | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF1 |
| SUPFAM:SSF51695 | Symbol:SVL2 | TMHMM:TMhelix | UniParc:UPI0001E92BEC | SEG:seg | : |
Description
SVL2SHV3-like 2 [Source:UniProtKB/TrEMBL;Acc:F4HQ30]
Coordinates
chr1:-:24992553..24996117
Molecular Weight (calculated)
86381.4 Da
IEP (calculated)
4.825
GRAVY (calculated)
-0.013
Length
785 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGESC SHFISFFCAL FPRKQENLCD APLVIARGGF SGLYPDSSIA AYQLATLTSV
101: ADVVLWCDLQ LTKDGLGICF PDLNLANAST IDRVYPNREK SYSVNGVTTK GWFPNDFSLT ELQNFLLIRG ILSRTDRFDG NGYLISTIED VVTTLNREGF
201: WLNVQHDAFY EQQNLSMSSF LLSVSRTVSI DFISSPEVNF FKKITGSFGR NGPTFVFQFL GKEDFEPTTN RTYGSILSNL TFVKTFASGI LVPKSYILPL
301: DDEQYLVPHT SLVQDAHKAG LQVYVSGFAN DVDIAYNYSS DPVSEYLSFV DNGDFSVDGV LSDFPITASA AVDCFSHIGR NATKQVDFLV ISKDGASGDY
401: PGCTDLAYEK AIKDGADVID CSVQMSSDGV PFCLRSIDLR NSIAALQNTF SNRSTSVPEI SSVPGIFTFS LTWPEIQSLT PAISNPFRVY RIFRNPREKN
501: SGKLISLSQF LDLAKTYTSL SGVLISVENA AYLREKQGLD VVQAVLDTLT EAGYSNGTTT TKVMIQSTNS SVLVDFKKQS KYETVYKIEE TIGNIRDSAI
601: EDIKKFANAV VINKDSVFPN SDSFLTGQTN VVERLQKSQL PVYVELFRNE FVSQAYDFFS DATVEINAYI YGAGINGTIT EFPFTAARYK RNRCLGREEV
701: PPYMLPVNPG GLLNVMSPLS LPPAQAPNQD FIEADVTEPP LSPVIAKAPT STPGTPSTIA QAPSGQTRLK LSLLLSVFFL SLLLL
101: ADVVLWCDLQ LTKDGLGICF PDLNLANAST IDRVYPNREK SYSVNGVTTK GWFPNDFSLT ELQNFLLIRG ILSRTDRFDG NGYLISTIED VVTTLNREGF
201: WLNVQHDAFY EQQNLSMSSF LLSVSRTVSI DFISSPEVNF FKKITGSFGR NGPTFVFQFL GKEDFEPTTN RTYGSILSNL TFVKTFASGI LVPKSYILPL
301: DDEQYLVPHT SLVQDAHKAG LQVYVSGFAN DVDIAYNYSS DPVSEYLSFV DNGDFSVDGV LSDFPITASA AVDCFSHIGR NATKQVDFLV ISKDGASGDY
401: PGCTDLAYEK AIKDGADVID CSVQMSSDGV PFCLRSIDLR NSIAALQNTF SNRSTSVPEI SSVPGIFTFS LTWPEIQSLT PAISNPFRVY RIFRNPREKN
501: SGKLISLSQF LDLAKTYTSL SGVLISVENA AYLREKQGLD VVQAVLDTLT EAGYSNGTTT TKVMIQSTNS SVLVDFKKQS KYETVYKIEE TIGNIRDSAI
601: EDIKKFANAV VINKDSVFPN SDSFLTGQTN VVERLQKSQL PVYVELFRNE FVSQAYDFFS DATVEINAYI YGAGINGTIT EFPFTAARYK RNRCLGREEV
701: PPYMLPVNPG GLLNVMSPLS LPPAQAPNQD FIEADVTEPP LSPVIAKAPT STPGTPSTIA QAPSGQTRLK LSLLLSVFFL SLLLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.