Factsheet for TraesCS7A01G243900.3

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G147500.1	Wheat	unclear	87.13	86.79
TraesCS7D01G242500.1	Wheat	golgi, plastid, unclear	86.61	82.22
KXG36695	Sorghum	plasma membrane	65.02	64.52
Zm00001d022153_P006	Maize	extracellular, mitochondrion	64.37	63.71
Zm00001d052875_P001	Maize	mitochondrion	62.16	61.6
Os09t0339800-00	Rice	extracellular, golgi	44.99	61.46
Zm00001d031412_P001	Maize	extracellular	58.0	59.87
Os12t0456700-01	Rice	cytosol	34.85	58.77
OQU80956	Sorghum	cytosol	67.62	58.76
PGSC0003DMT400033423	Potato	extracellular	9.62	56.49
TraesCS6A01G200600.1	Wheat	golgi	54.62	56.15
TraesCS2A01G330200.1	Wheat	extracellular, plasma membrane, vacuole	53.97	55.78
KRH14296	Soybean	endoplasmic reticulum	49.28	50.27
KRH73850	Soybean	endoplasmic reticulum	49.15	50.2
KRH46280	Soybean	cytosol	17.04	49.81
CDY71959	Canola	extracellular, plastid, vacuole	20.68	48.48
PGSC0003DMT400033463	Potato	extracellular, plasma membrane	47.46	48.47
Bra019073.1-P	Field mustard	extracellular, plasma membrane, plastid	31.47	48.4
VIT_19s0090g01490.t01	Wine grape	extracellular, plasma membrane, vacuole	47.59	48.35
Solyc12g014570.1.1	Tomato	nucleus	47.2	48.34
Solyc07g065120.2.1	Tomato	extracellular	46.68	47.68
KRH46281	Soybean	extracellular, golgi, plasma membrane	47.07	47.57
PGSC0003DMT400057418	Potato	extracellular	46.55	47.54
Bra004101.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.64	47.24
AT5G55480.1	Thale cress	plasma membrane	46.81	47.0
Bra002904.1-P	Field mustard	extracellular, plasma membrane, vacuole	46.29	46.97
CDY17323	Canola	plasma membrane	46.55	46.61
Bra028979.1-P	Field mustard	plasma membrane	46.42	46.61
CDY36746	Canola	plasma membrane	46.16	46.34
AT4G26690.1	Thale cress	extracellular, vacuole	45.64	46.25
CDX94294	Canola	extracellular, plasma membrane, vacuole	45.51	46.24
CDY61647	Canola	extracellular, plasma membrane	45.38	46.23
Bra019092.1-P	Field mustard	extracellular, plasma membrane, vacuole	43.04	46.16
CDX89312	Canola	extracellular, plasma membrane, vacuole	45.38	46.1
CDY45656	Canola	extracellular, golgi, plasma membrane	39.14	46.09
Bra035244.1-P	Field mustard	plasma membrane	45.38	46.04
CDY46687	Canola	extracellular, plasma membrane, vacuole	42.91	46.03
Bra026409.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.25	45.97
KRH46282	Soybean	extracellular, plasma membrane	45.38	45.86
KRG98622	Soybean	extracellular, golgi, plasma membrane	44.6	45.79
CDY72472	Canola	mitochondrion	22.37	45.74
CDY13237	Canola	extracellular, plasma membrane, vacuole	44.99	45.59
CDX92806	Canola	extracellular, plasma membrane, vacuole	42.13	45.25
CDY12605	Canola	extracellular, vacuole	41.87	44.97
AT1G66970.2	Thale cress	plasma membrane	45.77	44.84
KRG98625	Soybean	extracellular	42.0	44.74
Bra034037.1-P	Field mustard	extracellular, vacuole	41.48	44.55
CDY58867	Canola	plasma membrane	41.74	44.46
KRH46279	Soybean	extracellular	42.0	44.43
CDY11996	Canola	plasma membrane	44.6	44.37
CDY29432	Canola	cytosol, peroxisome	33.68	43.46
CDY19634	Canola	plasma membrane	40.31	42.7
CDX86807	Canola	cytosol	12.61	42.17
CDY60410	Canola	extracellular	7.41	41.91
CDY12599	Canola	cytosol	22.24	41.91
AT3G20520.1	Thale cress	plasma membrane	39.14	41.29
Bra034040.1-P	Field mustard	extracellular	7.28	41.18
Bra035208.1-P	Field mustard	extracellular, golgi, plastid	14.56	41.03
PGSC0003DMT400033459	Potato	endoplasmic reticulum	13.65	40.54
CDX86766	Canola	plasma membrane	33.29	40.44
CDX82242	Canola	cytosol	23.02	39.95
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	38.88	39.92
Bra035774.1-P	Field mustard	plasma membrane	41.48	39.05
GSMUA_AchrUn_...	Banana	extracellular	8.19	38.41
Bra001790.1-P	Field mustard	plasma membrane	41.22	37.92
CDY36036	Canola	plasma membrane	41.74	37.81
CDY42328	Canola	cytosol	12.61	37.6
TraesCS1A01G353200.1	Wheat	extracellular, plasma membrane	36.93	37.32
Bra035209.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	43.82	34.96
CDX86765	Canola	extracellular, mitochondrion, vacuole	6.89	31.93
AT1G66980.2	Thale cress	plasma membrane	43.56	29.21
CDY14478	Canola	plasma membrane	44.86	26.26
CDY60415	Canola	plasma membrane	39.27	25.46
TraesCS2A01G176400.1	Wheat	extracellular	10.4	21.74
TraesCS3A01G302700.1	Wheat	extracellular, golgi	10.4	20.46
TraesCS1A01G113300.1	Wheat	extracellular	10.01	20.16
TraesCS1A01G113200.1	Wheat	extracellular	10.01	20.16

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF6	SUPFAM:SSF51695
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7A01G243900	EnsemblPlants:TraesCS7A01G243900.3	TIGR:cd08603	TIGR:cd08604
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:220094142..220099698

Molecular Weight (calculated)

83610.3 Da

IEP (calculated)

6.415

GRAVY (calculated)

-0.075

Length

769 amino acids

Sequence
(BLAST)

001: MRSSRVRGGG GGGGGGEAAA FLAALLCGLL LLLGAADAQG IRRPSAYKTL RGDAPLVIAQ GGFSGVFPDS SQAAFAFALL ASAPDTSVWC DVQLTKDGVG
101: ICLRDINMAN CTNAATAYPA KKKKYVIDGV PKTGHFSLDF TYSEVQNTYL TQGFYSRTDR FDSIYNIFSV TDLQSYIKPP SVWLNVQHDA FYSQHGLNMR
201: RYIVSILKSV SVKYISSPEI GFLKSISKRV RGRTKLVFRF PDNFLSDPST NQTYSSLSKN LTFIKTIASG IMVPKSYIWP VTNDNYLLPP TPFVQDAHRA
301: GLEIYASDFA NDRIIPYNYS YDPLQEYLSF ISDGGFSVDG VLTDYPITAS EAIGCFANLN ESKADHGKPL IISHNGASGD YPDCTDLAYQ NAIKDGADVI
401: DCALQVTKDG VLICMSSINL LETTNVQRTP FSTLTSVIPE IKSTAGIYTF NLTWNNISDS SLKPKISSPL SSYYLVRNPR YTNNGKFVKF SDFLEYGKDQ
501: DLSGIMIIIE NAAFIAKSLG VDVLESLTTA LNDAGYNNQT TKEVMIQSTD SAVLVKLKQQ KAKYKLVYTL PQGIGDASPS SLADVKEFAE AVVVDRNSFF
601: AISLQFIINQ TSLVKDLRSA GLTVYAQVFR NEFLSQPWDF FSDETVEINS YAQSLKVDGL ITDFPKTVRR YKRNSCTGKD KPAYMETVDV GGLVQLLQRN
701: AAPEAQPPAV APMPELNETE VQQPPFPPVA PKNAPPGAAA PPGSSPSDAH TTAVSTCILL VAACAALLL

Best Arabidopsis Sequence Match ( AT1G66970.1 )
(BLAST)

001: MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL

Arabidopsis Description

SVL2SHV3-like 2 [Source:UniProtKB/TrEMBL;Acc:F4HQ30]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.