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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 2
  • golgi 3
  • extracellular 3
  • plasma membrane 4
  • endoplasmic reticulum 2
  • vacuole 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:golgi
iPSORT:plastid
MultiLoc:extracellular
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY36746 Canola plasma membrane 98.96 98.96
Bra002904.1-P Field mustard extracellular, plasma membrane, vacuole 79.9 80.74
AT5G55480.1 Thale cress plasma membrane 78.07 78.07
Bra035208.1-P Field mustard extracellular, golgi, plastid 26.76 75.09
Bra026409.1-P Field mustard extracellular, plasma membrane, vacuole 68.02 68.82
Bra019092.1-P Field mustard extracellular, plasma membrane, vacuole 64.23 68.62
Bra004101.1-P Field mustard extracellular, plasma membrane, vacuole 64.36 66.35
Bra035244.1-P Field mustard plasma membrane 65.01 65.7
Bra034037.1-P Field mustard extracellular, vacuole 60.7 64.94
Bra019073.1-P Field mustard extracellular, plasma membrane, plastid 41.91 64.2
Bra035209.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 74.02 58.82
Bra034040.1-P Field mustard extracellular 10.31 58.09
VIT_19s0090g01490.t01 Wine grape extracellular, plasma membrane, vacuole 55.09 55.75
PGSC0003DMT400033423 Potato extracellular 9.4 54.96
KRH73850 Soybean endoplasmic reticulum 53.79 54.71
KRH46281 Soybean extracellular, golgi, plasma membrane 53.66 54.01
KRH14296 Soybean endoplasmic reticulum 53.13 53.98
PGSC0003DMT400057418 Potato extracellular 52.48 53.39
Solyc12g014570.1.1 Tomato nucleus 52.22 53.26
Solyc07g065120.2.1 Tomato extracellular 52.35 53.25
PGSC0003DMT400033463 Potato extracellular, plasma membrane 51.83 52.72
KRH46280 Soybean cytosol 17.89 52.09
KRG98625 Soybean extracellular 48.83 51.8
KRH46282 Soybean extracellular, plasma membrane 51.44 51.77
KRH46279 Soybean extracellular 48.96 51.58
KRG98622 Soybean extracellular, golgi, plasma membrane 49.48 50.6
TraesCS6A01G200600.1 Wheat golgi 48.96 50.13
TraesCS6D01G189300.1 Wheat unclear 48.83 50.07
TraesCS2B01G352000.1 Wheat extracellular, plasma membrane, vacuole 48.43 49.87
TraesCS6B01G226700.2 Wheat golgi 48.56 49.8
TraesCS2D01G332500.1 Wheat golgi 48.3 49.73
TraesCS2A01G330200.1 Wheat extracellular, plasma membrane, vacuole 48.17 49.6
HORVU2Hr1G081920.3 Barley plasma membrane 47.91 49.33
Zm00001d050917_P002 Maize plasma membrane 48.3 49.14
HORVU6Hr1G052420.10 Barley extracellular, plasma membrane 48.96 49.02
EES05342 Sorghum plasma membrane 47.91 48.74
GSMUA_Achr8P25690_001 Banana plasma membrane 48.3 48.68
EES10974 Sorghum golgi 47.26 48.33
GSMUA_Achr1P16520_001 Banana extracellular, plasma membrane 46.87 47.8
GSMUA_Achr9P12610_001 Banana endoplasmic reticulum, plasma membrane, plastid 48.69 47.46
Zm00001d017036_P002 Maize plasma membrane 47.78 47.41
TraesCS7A01G243900.3 Wheat golgi 46.61 46.42
TraesCS7B01G147500.1 Wheat unclear 45.56 45.21
Zm00001d025670_P001 Maize mitochondrion 9.01 45.1
Bra035774.1-P Field mustard plasma membrane 48.04 45.04
KXG36695 Sorghum plasma membrane 44.91 44.39
Zm00001d031412_P001 Maize extracellular 42.43 43.62
Zm00001d052875_P001 Maize mitochondrion 44.13 43.56
Zm00001d022153_P006 Maize extracellular, mitochondrion 43.99 43.37
TraesCS7D01G242500.1 Wheat golgi, plastid, unclear 45.82 43.33
GSMUA_AchrUn_... Banana extracellular 9.27 43.29
PGSC0003DMT400033459 Potato endoplasmic reticulum 14.49 42.86
GSMUA_Achr3P03920_001 Banana cytosol 44.13 42.78
Bra002676.1-P Field mustard extracellular, golgi, plasma membrane 41.38 41.99
Bra001790.1-P Field mustard plasma membrane 45.82 41.99
Bra020384.1-P Field mustard extracellular, plasma membrane 41.25 41.8
Bra020395.1-P Field mustard plasma membrane 40.47 41.5
Bra006785.1-P Field mustard extracellular, plasma membrane 41.91 41.42
OQU80956 Sorghum cytosol 45.43 39.32
Os02t0187300-01 Rice endoplasmic reticulum, extracellular 1.57 33.33
Bra003814.1-P Field mustard golgi 11.49 22.51
Bra015928.1-P Field mustard extracellular, golgi, vacuole 11.36 22.14
Bra009316.1-P Field mustard extracellular, vacuole 10.18 20.97
Bra003813.1-P Field mustard cytosol 11.1 20.63
Bra015910.1-P Field mustard endoplasmic reticulum 0.0 0.0
Protein Annotations
Gene3D:3.20.20.190MapMan:35.1EnsemblPlantsGene:Bra028979EnsemblPlants:Bra028979.1EnsemblPlants:Bra028979.1-PGO:GO:0003674
GO:GO:0003824GO:GO:0006629GO:GO:0008081GO:GO:0008150GO:GO:0008152GO:GO:0016787
InterPro:GP_PDE_domInterPro:IPR017946InterPro:IPR030395UniProt:M4EJL3PFAM:PF03009InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704PANTHER:PTHR43620PANTHER:PTHR43620:SF1SUPFAM:SSF51695SignalP:SignalP-TMTMHMM:TMhelix
UniParc:UPI000253FE75SEG:seg::::
Description
AT5G55480 (E=0.0) SVL1 | SVL1 (SHV3-LIKE 1); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase
Coordinates
chrA03:-:5691711..5695218
Molecular Weight (calculated)
84456.2 Da
IEP (calculated)
5.566
GRAVY (calculated)
-0.049
Length
766 amino acids
Sequence
(BLAST)
001: MITSYMQDNP SMFVSRASKF LLSVLVLIQL LPTQLLAQRS KSPWQTLTGE APLVIARGGF SGLFPDSSFN AYSFVASTSA PDAVLWCDVQ LTKDGVGICF
101: PYVTMYNDSN VQEAYPKKKN SYLLNGVPTQ DWFTVDFTSR DLNTVFLTRG VLSRSNAFDN TQNVISTVQE VASEFKPAGF WLNVQHDAFY TQHNLSMSSF
201: LLTVSKTVII DYLSSPEVSF FRNIGGRFGK TGPKFVFRFL DKDDVEVSTN QTYGSLMKNL TFIKTFASGV LVPKSYIWPV KDQYLLPHTS FVRDAHTAGL
301: QVYGSGFAND FDIAYNYSYD PLTEYLSFMD NGDFSVDGFL SDFPLTASSA IDCFSHLGSN ASTQVDFLVI SKNGANGDYP GSTDLAYTKA IKDGADIIDC
401: AVQMSSDGIP FCLNSTNLGE SMNIVQTPFR NRSTTVPEFN SLAGLYSFNL AWSEIQTLTP AISNPYSRNF HMFRNPRERS SGKLVSLSEF LNLANNSSSL
501: VGVLINVEHA AYLREKQGLD VVKAVLDTLK ESGYSNATKR VMIQSSNSSV LVDIKKQSRY ETVYQVEETI RDIQDSAIQD IKKFADAVVV GRFSLYPISA
601: SFITGQTNLV ERLQKFKLPV YVETFRNEFV SQAYDFLSDA TVEINTHVTG AGVSGTITEF PLTAARYKRN RCVARKDTPV YMIPVRPAGL LEIVSPTFLP
701: PAEAPNPVIT DADVTEPPLP PVTAKAPTTS PGPLPTDKKA PNGQTRVTLS VFLSAFDVVL ASLLLL
Best Arabidopsis Sequence Match ( AT5G55480.1 )
(BLAST)
001: MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
101: VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
201: SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
301: YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
401: QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
501: VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
601: SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
701: PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL
Arabidopsis Description
GDPDL4Glycerophosphodiester phosphodiesterase GDPDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ62]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.