Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
23353019
plasma membrane: 23508561 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
23353019
doi
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05342 | Sorghum | plasma membrane | 87.65 | 87.65 |
| Zm00001d017036_P002 | Maize | plasma membrane | 88.84 | 86.66 |
| Os02t0588500-02 | Rice | extracellular | 75.7 | 76.1 |
| TraesCS6B01G226700.2 | Wheat | golgi | 72.91 | 73.49 |
| TraesCS6A01G200600.1 | Wheat | golgi | 72.91 | 73.4 |
| TraesCS6D01G189300.1 | Wheat | unclear | 72.64 | 73.23 |
| HORVU6Hr1G052420.10 | Barley | extracellular, plasma membrane | 73.44 | 72.29 |
| Zm00001d025670_P001 | Maize | mitochondrion | 13.41 | 66.01 |
| GSMUA_Achr8P25690_001 | Banana | plasma membrane | 60.29 | 59.74 |
| GSMUA_Achr9P12610_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 60.16 | 57.63 |
| KRH14296 | Soybean | endoplasmic reticulum | 53.12 | 53.05 |
| KRH73850 | Soybean | endoplasmic reticulum | 52.99 | 52.99 |
| PGSC0003DMT400033423 | Potato | extracellular | 9.16 | 52.67 |
| KRH46280 | Soybean | cytosol | 18.33 | 52.47 |
| GSMUA_Achr3P03920_001 | Banana | cytosol | 54.18 | 51.65 |
| Bra019073.1-P | Field mustard | extracellular, plasma membrane, plastid | 34.13 | 51.4 |
| VIT_19s0090g01490.t01 | Wine grape | extracellular, plasma membrane, vacuole | 51.26 | 50.99 |
| Zm00001d022153_P006 | Maize | extracellular, mitochondrion | 52.32 | 50.71 |
| Solyc07g065120.2.1 | Tomato | extracellular | 50.6 | 50.6 |
| KRH46281 | Soybean | extracellular, golgi, plasma membrane | 51.0 | 50.46 |
| Zm00001d052875_P001 | Maize | mitochondrion | 51.93 | 50.39 |
| KRH46282 | Soybean | extracellular, plasma membrane | 50.86 | 50.33 |
| CDY71959 | Canola | extracellular, plastid, vacuole | 21.91 | 50.3 |
| PGSC0003DMT400057418 | Potato | extracellular | 50.2 | 50.2 |
| PGSC0003DMT400033463 | Potato | extracellular, plasma membrane | 50.07 | 50.07 |
| Solyc12g014570.1.1 | Tomato | nucleus | 49.67 | 49.8 |
| AT4G26690.1 | Thale cress | extracellular, vacuole | 49.93 | 49.54 |
| CDX94294 | Canola | extracellular, plasma membrane, vacuole | 49.67 | 49.41 |
| CDX89312 | Canola | extracellular, plasma membrane, vacuole | 49.54 | 49.27 |
| Bra026409.1-P | Field mustard | extracellular, plasma membrane, vacuole | 49.54 | 49.27 |
| KRG98622 | Soybean | extracellular, golgi, plasma membrane | 48.87 | 49.13 |
| Bra002904.1-P | Field mustard | extracellular, plasma membrane, vacuole | 49.4 | 49.08 |
| AT5G55480.1 | Thale cress | plasma membrane | 49.67 | 48.83 |
| Bra004101.1-P | Field mustard | extracellular, plasma membrane, vacuole | 47.81 | 48.45 |
| CDY17323 | Canola | plasma membrane | 49.4 | 48.44 |
| CDY36746 | Canola | plasma membrane | 49.27 | 48.43 |
| Bra028979.1-P | Field mustard | plasma membrane | 49.14 | 48.3 |
| KRH46279 | Soybean | extracellular | 46.48 | 48.14 |
| CDY72472 | Canola | mitochondrion | 24.04 | 48.14 |
| CDY45656 | Canola | extracellular, golgi, plasma membrane | 41.57 | 47.93 |
| CDY61647 | Canola | extracellular, plasma membrane | 47.94 | 47.81 |
| Zm00001d031412_P001 | Maize | extracellular | 47.28 | 47.79 |
| KRG98625 | Soybean | extracellular | 45.82 | 47.78 |
| Bra035244.1-P | Field mustard | plasma membrane | 47.81 | 47.49 |
| CDY12605 | Canola | extracellular, vacuole | 45.15 | 47.49 |
| CDY46687 | Canola | extracellular, plasma membrane, vacuole | 44.75 | 47.0 |
| Bra019092.1-P | Field mustard | extracellular, plasma membrane, vacuole | 44.75 | 47.0 |
| CDY11996 | Canola | plasma membrane | 48.21 | 46.96 |
| Bra034037.1-P | Field mustard | extracellular, vacuole | 44.62 | 46.93 |
| CDX92806 | Canola | extracellular, plasma membrane, vacuole | 44.49 | 46.79 |
| CDY13237 | Canola | extracellular, plasma membrane, vacuole | 46.88 | 46.51 |
| AT1G66970.2 | Thale cress | plasma membrane | 48.47 | 46.5 |
| CDY29432 | Canola | cytosol, peroxisome | 36.39 | 45.97 |
| CDY19634 | Canola | plasma membrane | 43.82 | 45.45 |
| Bra035208.1-P | Field mustard | extracellular, golgi, plastid | 16.47 | 45.42 |
| CDY58867 | Canola | plasma membrane | 42.76 | 44.6 |
| AT3G20520.1 | Thale cress | plasma membrane | 42.63 | 44.03 |
| CDY12599 | Canola | cytosol | 23.51 | 43.38 |
| CDX82242 | Canola | cytosol | 25.37 | 43.12 |
| Zm00001d015609_P002 | Maize | plasma membrane | 43.29 | 42.84 |
| CDY60410 | Canola | extracellular | 7.7 | 42.65 |
| CDX86807 | Canola | cytosol | 13.01 | 42.61 |
| CDY42328 | Canola | cytosol | 14.48 | 42.25 |
| Bra035774.1-P | Field mustard | plasma membrane | 45.15 | 41.62 |
| CDX86766 | Canola | plasma membrane | 34.0 | 40.44 |
| PGSC0003DMT400033459 | Potato | endoplasmic reticulum | 13.68 | 39.77 |
| Bra001790.1-P | Field mustard | plasma membrane | 44.09 | 39.71 |
| Bra034040.1-P | Field mustard | extracellular | 7.17 | 39.71 |
| CDY36036 | Canola | plasma membrane | 44.49 | 39.46 |
| Bra035209.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 45.95 | 35.89 |
| CDX86765 | Canola | extracellular, mitochondrion, vacuole | 7.17 | 32.53 |
| AT1G66980.2 | Thale cress | plasma membrane | 46.88 | 30.78 |
| CDY14478 | Canola | plasma membrane | 46.08 | 26.41 |
| CDY60415 | Canola | plasma membrane | 39.97 | 25.38 |
| Zm00001d012677_P012 | Maize | golgi | 12.35 | 23.79 |
| Zm00001d022067_P001 | Maize | extracellular | 11.55 | 23.39 |
| Zm00001d033187_P001 | Maize | plastid | 11.95 | 21.63 |
Protein Annotations
| EntrezGene:100383563 | Gene3D:3.20.20.190 | MapMan:35.1 | ProteinID:AQK53237.1 | EMBL:BT067517 | EMBL:BT067607 |
| UniProt:C0PGU8 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | InterPro:GP_PDE_dom | InterPro:IPR017946 | InterPro:IPR030395 | PFAM:PF03009 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | PFscan:PS51704 | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF2 | SUPFAM:SSF51695 | SignalP:SignalP-noTM |
| UniParc:UPI000195CA82 | EnsemblPlantsGene:Zm00001d050917 | EnsemblPlants:Zm00001d050917_P002 | EnsemblPlants:Zm00001d050917_T002 | SEG:seg | : |
Description
Glycerophosphodiester phosphodiesterase GDPDL3
Coordinates
chr4:+:130884294..130889709
Molecular Weight (calculated)
81688.6 Da
IEP (calculated)
5.844
GRAVY (calculated)
0.062
Length
753 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAMGRSSRA CSLLGSTHLL LLLLLSVGSA VAQNGSTWKT LSGKAPAVVA KGGFSGLFPD SSDYAYQFVG ISSSPDTTVW CDVRLTKDGA GICLPSINMD
101: NCTIIASVFP QGKKTYKVNG VSTAGWFSVD YTSTVLLQNV SLKQSVLSRT PAYDGLFQIN PVENIFTLYK APAVWLNVQH DSFYSQFKLS MRSYILSLSK
201: QFIVDYISSP EVNFLTSISG RVSKKTKLVF RFLDERSIEP STNQTYGSML KNLTFVKTFA SGILVPKSYI WPVTPDNYLL PYTSVVDDAH KAGLEIYAAD
301: FANDLTISYN YSFDPLAEYL FFIDNGAFSV DGVLTDFPIT PSEAVGCFSN LNTSKIDHAK PLVISHNGAS GDYPDCTDQA YEKAVADGAD VIDCPVQVTK
401: DGILICMSSV DLMDVTTVAK SQFASQVTTI NSLKAGSGVF TFNLTWDDIS KNLKPMISNP MSTYNLYRNP RNKNAGNFMR LSDFLTFANG KDLSGIMITV
501: EHAAFMAEEL GFGVVDAVIK ALDDSGYSKQ TAQNVMIQST NSSVLVKFKQ ETKYNLVYMI EESVRDAAPS SLADIKKFAD AVSVGTTSVF PETHYYLTNQ
601: TNKLVPTLKS AGLQVYVYVL MNEFASQPND FFADATSQIN AYVQSAKVDG VITDFPGTAH RYKLNSCTSM GKNMPLFMQP PQPGGLLSTI LPDAQPPAAA
701: PMPLLTDADV AEPALPPVSN TTTAASPSHA ALRMRTHVLS IATLLMLCAS LLI
101: NCTIIASVFP QGKKTYKVNG VSTAGWFSVD YTSTVLLQNV SLKQSVLSRT PAYDGLFQIN PVENIFTLYK APAVWLNVQH DSFYSQFKLS MRSYILSLSK
201: QFIVDYISSP EVNFLTSISG RVSKKTKLVF RFLDERSIEP STNQTYGSML KNLTFVKTFA SGILVPKSYI WPVTPDNYLL PYTSVVDDAH KAGLEIYAAD
301: FANDLTISYN YSFDPLAEYL FFIDNGAFSV DGVLTDFPIT PSEAVGCFSN LNTSKIDHAK PLVISHNGAS GDYPDCTDQA YEKAVADGAD VIDCPVQVTK
401: DGILICMSSV DLMDVTTVAK SQFASQVTTI NSLKAGSGVF TFNLTWDDIS KNLKPMISNP MSTYNLYRNP RNKNAGNFMR LSDFLTFANG KDLSGIMITV
501: EHAAFMAEEL GFGVVDAVIK ALDDSGYSKQ TAQNVMIQST NSSVLVKFKQ ETKYNLVYMI EESVRDAAPS SLADIKKFAD AVSVGTTSVF PETHYYLTNQ
601: TNKLVPTLKS AGLQVYVYVL MNEFASQPND FFADATSQIN AYVQSAKVDG VITDFPGTAH RYKLNSCTSM GKNMPLFMQP PQPGGLLSTI LPDAQPPAAA
701: PMPLLTDADV AEPALPPVSN TTTAASPSHA ALRMRTHVLS IATLLMLCAS LLI
001: MRGLLRASSL LLCGVILIQL LAAQIHAQSK KPKSPWPTLT GDPPLVIARG GFSGLFPDSS YDAYNFAILT SVPDAVLWCD VQLTKDALGI CFPDLTMRNS
101: SSIEAVYPTR QKSYPVNGVP TSGWFTIDFS LKDLKDVNLI RGILSRSEKF DGNSNPIMTV QSVSTQMKPS FFWLNVQHDA FYAQHNLSMS SFLVAASKTV
201: LIDFISSPEV NFFKKIAGRF GRNGPSLVFR FLGQDEFEPT TNRTYGSILS NLTFVKTFAS GILVPKSYIL PLDDQQYLLP HTSLVQDAHK AGLEVFVSGF
301: ANDIDIAHDY SFDPVSEYLS FVDNGNFSVD GVLSDFPITA SASLDCFSHV GRNATKQVDF LVITKDGASG DYPGCTDLAY KKAIKDGADV IDCSVQLSSD
401: GTPFCLSSID LGNSTTVSLT AFRNRSTTVP ELGSLGAIYT FSLTWAEIQT LTPAISNPYR VTSLFRNPKQ KNAGKLFSLS DFLSLAKNST SLSGVLISVE
501: NAAYLREEQG LDVVKAVLDT LTQTGYSNST ATKVMIQSTN SSVLVDFKKQ SQYETVYKVE ENIRDILDSA IEDIKKFADA VVIQKLSVFP VAQSFITTQT
601: NVVEKLQKSQ LPVYVELFQN EFLSQPYDFF ADATVEINSY ITGAGINGTI TEFPFTAARY KRNLCLGRKE TIPYMAPAQP GALLTLVSPT AFPPAEAPNP
701: VFTDADVTEP PLPPVTAKAP TSSPGTPSTN AQAPSGQTRI TLSLLLSVFA MVLASLLLL
101: SSIEAVYPTR QKSYPVNGVP TSGWFTIDFS LKDLKDVNLI RGILSRSEKF DGNSNPIMTV QSVSTQMKPS FFWLNVQHDA FYAQHNLSMS SFLVAASKTV
201: LIDFISSPEV NFFKKIAGRF GRNGPSLVFR FLGQDEFEPT TNRTYGSILS NLTFVKTFAS GILVPKSYIL PLDDQQYLLP HTSLVQDAHK AGLEVFVSGF
301: ANDIDIAHDY SFDPVSEYLS FVDNGNFSVD GVLSDFPITA SASLDCFSHV GRNATKQVDF LVITKDGASG DYPGCTDLAY KKAIKDGADV IDCSVQLSSD
401: GTPFCLSSID LGNSTTVSLT AFRNRSTTVP ELGSLGAIYT FSLTWAEIQT LTPAISNPYR VTSLFRNPKQ KNAGKLFSLS DFLSLAKNST SLSGVLISVE
501: NAAYLREEQG LDVVKAVLDT LTQTGYSNST ATKVMIQSTN SSVLVDFKKQ SQYETVYKVE ENIRDILDSA IEDIKKFADA VVIQKLSVFP VAQSFITTQT
601: NVVEKLQKSQ LPVYVELFQN EFLSQPYDFF ADATVEINSY ITGAGINGTI TEFPFTAARY KRNLCLGRKE TIPYMAPAQP GALLTLVSPT AFPPAEAPNP
701: VFTDADVTEP PLPPVTAKAP TSSPGTPSTN AQAPSGQTRI TLSLLLSVFA MVLASLLLL
Arabidopsis Description
GDPDL3Glycerophosphodiester phosphodiesterase GDPDL3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ11]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.