Factsheet for TraesCS6D01G189300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G226700.2	Wheat	golgi	97.99	97.99
TraesCS6A01G200600.1	Wheat	golgi	97.46	97.33
HORVU6Hr1G052420.10	Barley	extracellular, plasma membrane	91.03	88.89
Os02t0588500-02	Rice	extracellular	73.9	73.7
Zm00001d050917_P002	Maize	plasma membrane	73.23	72.64
EES05342	Sorghum	plasma membrane	71.89	71.31
Zm00001d017036_P002	Maize	plasma membrane	72.16	69.82
TraesCS2D01G332500.1	Wheat	golgi	68.54	68.82
GSMUA_Achr8P25690_001	Banana	plasma membrane	59.17	58.16
GSMUA_Achr9P12610_001	Banana	endoplasmic reticulum, plasma membrane, plastid	59.04	56.11
PGSC0003DMT400033423	Potato	extracellular	9.24	52.67
KRH46280	Soybean	cytosol	18.34	52.09
KRH73850	Soybean	endoplasmic reticulum	52.48	52.06
KRH14296	Soybean	endoplasmic reticulum	52.48	51.99
Solyc07g065120.2.1	Tomato	extracellular	52.21	51.79
PGSC0003DMT400057418	Potato	extracellular	51.94	51.53
GSMUA_Achr3P03920_001	Banana	cytosol	54.35	51.39
CDY71959	Canola	extracellular, plastid, vacuole	22.36	50.91
Bra019073.1-P	Field mustard	extracellular, plasma membrane, plastid	34.0	50.8
TraesCS7D01G242500.1	Wheat	golgi, plastid, unclear	54.62	50.37
VIT_19s0090g01490.t01	Wine grape	extracellular, plasma membrane, vacuole	51.0	50.33
Solyc12g014570.1.1	Tomato	nucleus	50.07	49.8
Bra002904.1-P	Field mustard	extracellular, plasma membrane, vacuole	50.33	49.6
PGSC0003DMT400033463	Potato	extracellular, plasma membrane	49.93	49.54
KRH46282	Soybean	extracellular, plasma membrane	50.07	49.15
KRH46281	Soybean	extracellular, golgi, plasma membrane	50.07	49.15
CDY36746	Canola	plasma membrane	50.2	48.96
AT5G55480.1	Thale cress	plasma membrane	50.2	48.96
CDY17323	Canola	plasma membrane	50.2	48.83
Bra028979.1-P	Field mustard	plasma membrane	50.07	48.83
KRH46279	Soybean	extracellular	47.39	48.69
CDX94294	Canola	extracellular, plasma membrane, vacuole	49.13	48.48
Bra026409.1-P	Field mustard	extracellular, plasma membrane, vacuole	49.13	48.48
CDX89312	Canola	extracellular, plasma membrane, vacuole	49.0	48.35
KRG98625	Soybean	extracellular	46.72	48.34
Bra004101.1-P	Field mustard	extracellular, plasma membrane, vacuole	48.06	48.32
AT4G26690.1	Thale cress	extracellular, vacuole	49.0	48.22
CDY61647	Canola	extracellular, plasma membrane	48.46	47.95
KRG98622	Soybean	extracellular, golgi, plasma membrane	48.06	47.93
CDY46687	Canola	extracellular, plasma membrane, vacuole	45.52	47.42
Bra019092.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.52	47.42
Bra035244.1-P	Field mustard	plasma membrane	48.06	47.36
CDY12605	Canola	extracellular, vacuole	45.38	47.35
CDY45656	Canola	extracellular, golgi, plasma membrane	41.37	47.32
Bra034037.1-P	Field mustard	extracellular, vacuole	45.11	47.07
CDY11996	Canola	plasma membrane	48.59	46.96
CDX92806	Canola	extracellular, plasma membrane, vacuole	44.98	46.93
CDY13237	Canola	extracellular, plasma membrane, vacuole	47.26	46.51
CDY72472	Canola	mitochondrion	23.29	46.28
AT1G66970.2	Thale cress	plasma membrane	48.33	45.99
CDY29432	Canola	cytosol, peroxisome	36.55	45.81
CDY60410	Canola	extracellular	8.3	45.59
Bra035208.1-P	Field mustard	extracellular, golgi, plastid	16.6	45.42
CDY19634	Canola	plasma membrane	43.37	44.63
CDY58867	Canola	plasma membrane	42.84	44.32
Bra034040.1-P	Field mustard	extracellular	8.03	44.12
CDY12599	Canola	cytosol	24.1	44.12
AT3G20520.1	Thale cress	plasma membrane	42.7	43.76
CDX86807	Canola	cytosol	13.25	43.04
CDX82242	Canola	cytosol	25.3	42.66
CDY42328	Canola	cytosol	14.59	42.25
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	41.23	41.12
Bra035774.1-P	Field mustard	plasma membrane	44.58	40.76
CDX86766	Canola	plasma membrane	34.54	40.76
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	40.7	39.95
Bra001790.1-P	Field mustard	plasma membrane	43.51	38.88
CDY36036	Canola	plasma membrane	44.18	38.87
PGSC0003DMT400033459	Potato	endoplasmic reticulum	13.12	37.84
Bra035209.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	46.85	36.31
CDX86765	Canola	extracellular, mitochondrion, vacuole	7.36	33.13
AT1G66980.2	Thale cress	plasma membrane	47.12	30.69
CDY14478	Canola	plasma membrane	47.52	27.02
CDY60415	Canola	plasma membrane	41.1	25.89
TraesCS3D01G299100.1	Wheat	extracellular, golgi	13.12	25.06
TraesCS2D01G183800.1	Wheat	extracellular	12.18	24.73
TraesCS1D01G114700.2	Wheat	extracellular	11.38	22.25
TraesCS1D01G114600.1	Wheat	extracellular, vacuole	10.98	21.47

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF2	SUPFAM:SSF51695
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G189300	EnsemblPlants:TraesCS6D01G189300.1	TIGR:cd08603	TIGR:cd08604
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:262267463..262271697

Molecular Weight (calculated)

80383.0 Da

IEP (calculated)

5.673

GRAVY (calculated)

0.059

Length

747 amino acids

Sequence
(BLAST)

001: MGRSGHACSV LGSLLLLLLL LGPAAAQKGS TWKTLSGDAP AVIAKGGFSG LFPDSSDPAY SFAASNQDSA QWCDVRLTKD GVGICLPDIK MDNCTTISDL
101: FPKGKKTYLV NGVSTTGWFS VDYNSIDLTN VTLLRAILSR TNRFDGSFTL VQVEVALSQY KAPAWLNVQH DSFYSQFNLS MRSYILSMSK QYTVDYISSP
201: EVSFLKSLVG RVGRKTKLVL RFLDEGLVEP STNQTYGSIL KNLSSIKTFA SGILVPKHYI WPVTADNYLQ PSTSVVDDAH KAGLEIYAAD FANDFALSYN
301: YSYDPLAEYL GFIDNGAFCV DGLLTDFPIT PLEAIGCFSN LNNTKADHGA PLVISHNGAS GDYPDCTDLA YQKAVQDGAD VIDCDVQVTK DGIPICMSSI
401: DLMDVTTVAS SQFASQAGVI SDIKAVAGVY TFNLTWEDIA NNLKPMISNP FGQISLSRNP RNRNAGKFMR LSDFLAFAKG KKLSGIMITV EHASFMAEKL
501: GFGVVDAVIK AVDDSGYSKQ SAQKVMIQST NSSTLVKFKQ LAKYNLVYKI DEVVKDAAPS SLADIKKFAD AASVSIKSVY PESSNFLINQ TNPLVKSLQS
601: AGLPVYVYLL MNEFFSQPYD FFSDATSQIN ALVHKGGEGG GVDGLITDFP GTAHRYKLNS CRNMGDKTPY YMLPPQRGGL VGVIQDKAAL PPAMAPEPVL
701: TVSDVAEPPL PPVSNTTAPA PSHAPVEVSV SIPITAAVLV LCASLLI

Best Arabidopsis Sequence Match ( AT5G55480.1 )
(BLAST)

001: MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
101: VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
201: SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
301: YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
401: QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
501: VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
601: SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
701: PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL

Arabidopsis Description

GDPDL4Glycerophosphodiester phosphodiesterase GDPDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ62]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.