Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- plastid 1
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19634 | Canola | plasma membrane | 71.6 | 71.9 |
| CDY29432 | Canola | cytosol, peroxisome | 58.44 | 71.48 |
| CDX82242 | Canola | cytosol | 41.98 | 69.07 |
| Bra035774.1-P | Field mustard | plasma membrane | 71.47 | 63.77 |
| CDY36036 | Canola | plasma membrane | 68.59 | 58.89 |
| Bra001790.1-P | Field mustard | plasma membrane | 66.26 | 57.78 |
| KRH46279 | Soybean | extracellular | 51.44 | 51.58 |
| KRG98625 | Soybean | extracellular | 50.75 | 51.25 |
| PGSC0003DMT400033423 | Potato | extracellular | 9.05 | 50.38 |
| KRH46280 | Soybean | cytosol | 17.83 | 49.43 |
| Solyc12g014570.1.1 | Tomato | nucleus | 50.21 | 48.73 |
| PGSC0003DMT400033463 | Potato | extracellular, plasma membrane | 50.21 | 48.61 |
| KRH46281 | Soybean | extracellular, golgi, plasma membrane | 50.48 | 48.36 |
| VIT_19s0090g01490.t01 | Wine grape | extracellular, plasma membrane, vacuole | 49.93 | 48.08 |
| KRH14296 | Soybean | endoplasmic reticulum | 49.52 | 47.88 |
| KRH46282 | Soybean | extracellular, plasma membrane | 49.66 | 47.57 |
| KRH73850 | Soybean | endoplasmic reticulum | 49.11 | 47.54 |
| Solyc07g065120.2.1 | Tomato | extracellular | 48.56 | 47.01 |
| PGSC0003DMT400057418 | Potato | extracellular | 47.87 | 46.35 |
| AT4G26690.1 | Thale cress | extracellular, vacuole | 48.01 | 46.11 |
| KRG98622 | Soybean | extracellular, golgi, plasma membrane | 46.91 | 45.66 |
| AT5G55480.1 | Thale cress | plasma membrane | 47.46 | 45.17 |
| GSMUA_Achr8P25690_001 | Banana | plasma membrane | 45.95 | 44.08 |
| AT1G66970.2 | Thale cress | plasma membrane | 47.05 | 43.69 |
| TraesCS2D01G332500.1 | Wheat | golgi | 44.31 | 43.41 |
| TraesCS2A01G330200.1 | Wheat | extracellular, plasma membrane, vacuole | 44.17 | 43.28 |
| HORVU2Hr1G081920.3 | Barley | plasma membrane | 44.03 | 43.15 |
| TraesCS2B01G352000.1 | Wheat | extracellular, plasma membrane, vacuole | 43.9 | 43.01 |
| TraesCS6A01G200600.1 | Wheat | golgi | 44.03 | 42.91 |
| EES05342 | Sorghum | plasma membrane | 44.17 | 42.76 |
| TraesCS6D01G189300.1 | Wheat | unclear | 43.76 | 42.7 |
| TraesCS6B01G226700.2 | Wheat | golgi | 43.76 | 42.7 |
| Zm00001d050917_P002 | Maize | plasma membrane | 44.03 | 42.63 |
| GSMUA_Achr9P12610_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 45.82 | 42.49 |
| GSMUA_Achr1P16520_001 | Banana | extracellular, plasma membrane | 43.76 | 42.48 |
| EES10974 | Sorghum | golgi | 43.62 | 42.46 |
| HORVU6Hr1G052420.10 | Barley | extracellular, plasma membrane | 44.44 | 42.35 |
| Zm00001d017036_P002 | Maize | plasma membrane | 43.21 | 40.8 |
| PGSC0003DMT400033459 | Potato | endoplasmic reticulum | 13.99 | 39.38 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 40.47 | 39.18 |
| TraesCS7A01G243900.3 | Wheat | golgi | 41.29 | 39.14 |
| KXG36695 | Sorghum | plasma membrane | 41.56 | 39.1 |
| Zm00001d022153_P006 | Maize | extracellular, mitochondrion | 41.43 | 38.87 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 39.92 | 38.8 |
| GSMUA_Achr3P03920_001 | Banana | cytosol | 41.98 | 38.73 |
| TraesCS7B01G147500.1 | Wheat | unclear | 41.02 | 38.73 |
| GSMUA_AchrUn_... | Banana | extracellular | 8.5 | 37.8 |
| Zm00001d052875_P001 | Maize | mitochondrion | 39.78 | 37.37 |
| TraesCS7D01G242500.1 | Wheat | golgi, plastid, unclear | 41.43 | 37.28 |
| Zm00001d025670_P001 | Maize | mitochondrion | 7.68 | 36.6 |
| Zm00001d031412_P001 | Maize | extracellular | 36.9 | 36.11 |
| OQU80956 | Sorghum | cytosol | 41.43 | 34.12 |
| Os02t0187300-01 | Rice | endoplasmic reticulum, extracellular | 1.51 | 30.56 |
| AT1G66980.2 | Thale cress | plasma membrane | 45.13 | 28.68 |
| AT1G74210.1 | Thale cress | extracellular | 11.39 | 21.17 |
| AT5G08030.2 | Thale cress | golgi | 10.15 | 19.12 |
Protein Annotations
| Gene3D:3.20.20.190 | MapMan:35.1 | EntrezGene:821598 | ProteinID:AAF14830.1 | ProteinID:AEE76390.1 | ArrayExpress:AT3G20520 |
| EnsemblPlantsGene:AT3G20520 | RefSeq:AT3G20520 | TAIR:AT3G20520 | RefSeq:AT3G20520-TAIR-G | EnsemblPlants:AT3G20520.1 | TAIR:AT3G20520.1 |
| Unigene:At.23311 | EMBL:BT004193 | UniProt:F4JEQ1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0006071 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008889 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0031225 |
| InterPro:GP_PDE_dom | InterPro:IPR017946 | InterPro:IPR030395 | RefSeq:NP_188688.1 | PFAM:PF03009 | InterPro:PLC-like_Pdiesterase_TIM-brl |
| PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009001 | PO:PO:0009009 | PO:PO:0009029 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0009062 | PO:PO:0020003 |
| PO:PO:0025022 | PFscan:PS51704 | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF8 | SUPFAM:SSF51695 | Symbol:SVL3 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000016348F | SEG:seg | : | : |
Description
GDPDL5Glycerophosphodiester phosphodiesterase GDPDL5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEQ1]
Coordinates
chr3:+:7162766..7165864
Molecular Weight (calculated)
81364.4 Da
IEP (calculated)
6.782
GRAVY (calculated)
-0.057
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MACPRVIFLI LITFFILQTA FSSSWQTLSG KPPAVIARGG FSGMFPDSSI QAYQLVNITT SPDVMLWCDL QLTKDGVGIC FPNLKLDNGS NVIRIDPHYK
101: ERFSVDFTWK ELSDVKLAQG VVSRPYIFDD VSSILAIEEV AKLTASGLWL NIQDSAFYAK HNLSMRNSVV SLSRRLKVNF ISSPGISFLK SMKNSVKPTV
201: TKLIFRFLKQ EHIEPFTNQS YGSLAKNLSY IRTFSSGILV PKSYIWPVDS ALYLQPHTSL VTDAHKEGLQ VFASEFANDF VIAYNYSYDP TAEYLSFIDN
301: GNFSVDGFLS DFPVTPYRAI NCFSHVDPKR AKEQAKITII SKNGASGDFP GCTDLAYQRA ASDGADILDC NVQMSKDKIP FCMSSFDLIN STNVIETSFR
401: NLSSVVSEIN PRRSGIYTFS LTMSQIQTLK PTISNLEKDS GLFRNPRNNK AGKFLTLSEF LFLPNRYSSL LGLLIEVENA AYLVEHQGIS VVDAVLDELK
501: RATTQQNKTS ARTILIQSTD KSVLMKFKEK NKMNHDELVY RVDDNIRDVA DSAIKDIKNF AGSIVISKKS VFPYKGFIIL EKETNIASKL KSNGLRVYVE
601: RFSNECVTHA FDFYDDPTLE IDSFVRDVQI DGIITDFPAT TARYRKNKCY GEFGLTTTGE LITFANPMLL PPAEAPYPAL LDSDVTEPPL PEARSQPPAS
701: SPSKAEEKAI EVPFAFIAMA ILVCFFISV
101: ERFSVDFTWK ELSDVKLAQG VVSRPYIFDD VSSILAIEEV AKLTASGLWL NIQDSAFYAK HNLSMRNSVV SLSRRLKVNF ISSPGISFLK SMKNSVKPTV
201: TKLIFRFLKQ EHIEPFTNQS YGSLAKNLSY IRTFSSGILV PKSYIWPVDS ALYLQPHTSL VTDAHKEGLQ VFASEFANDF VIAYNYSYDP TAEYLSFIDN
301: GNFSVDGFLS DFPVTPYRAI NCFSHVDPKR AKEQAKITII SKNGASGDFP GCTDLAYQRA ASDGADILDC NVQMSKDKIP FCMSSFDLIN STNVIETSFR
401: NLSSVVSEIN PRRSGIYTFS LTMSQIQTLK PTISNLEKDS GLFRNPRNNK AGKFLTLSEF LFLPNRYSSL LGLLIEVENA AYLVEHQGIS VVDAVLDELK
501: RATTQQNKTS ARTILIQSTD KSVLMKFKEK NKMNHDELVY RVDDNIRDVA DSAIKDIKNF AGSIVISKKS VFPYKGFIIL EKETNIASKL KSNGLRVYVE
601: RFSNECVTHA FDFYDDPTLE IDSFVRDVQI DGIITDFPAT TARYRKNKCY GEFGLTTTGE LITFANPMLL PPAEAPYPAL LDSDVTEPPL PEARSQPPAS
701: SPSKAEEKAI EVPFAFIAMA ILVCFFISV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.