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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • golgi 6
  • plasma membrane 8
  • endoplasmic reticulum 5
  • vacuole 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 29385242
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G332500.1 Wheat golgi 96.24 96.24
TraesCS2B01G352000.1 Wheat extracellular, plasma membrane, vacuole 96.1 96.1
TraesCS2A01G330200.1 Wheat extracellular, plasma membrane, vacuole 95.97 95.97
Os04t0472300-01 Rice extracellular, plasma membrane 82.93 83.38
EES10974 Sorghum golgi 78.9 78.37
Zm00001d025670_P001 Maize mitochondrion 15.19 73.86
HORVU6Hr1G052420.10 Barley extracellular, plasma membrane 68.82 66.93
GSMUA_Achr8P25690_001 Banana plasma membrane 62.63 61.32
PGSC0003DMT400033423 Potato extracellular 10.35 58.78
GSMUA_Achr9P12610_001 Banana endoplasmic reticulum, plasma membrane, plastid 61.29 58.02
Solyc12g014570.1.1 Tomato nucleus 53.09 52.6
PGSC0003DMT400057418 Potato extracellular 53.23 52.59
PGSC0003DMT400033463 Potato extracellular, plasma membrane 53.09 52.46
Solyc07g065120.2.1 Tomato extracellular 52.55 51.93
KRH73850 Soybean endoplasmic reticulum 52.28 51.66
KRH46280 Soybean cytosol 18.15 51.33
KRH14296 Soybean endoplasmic reticulum 51.75 51.06
GSMUA_Achr3P03920_001 Banana cytosol 53.9 50.76
VIT_19s0090g01490.t01 Wine grape extracellular, plasma membrane, vacuole 51.61 50.73
KRH46281 Soybean extracellular, golgi, plasma membrane 50.94 49.8
Bra019073.1-P Field mustard extracellular, plasma membrane, plastid 33.06 49.2
CDY71959 Canola extracellular, plastid, vacuole 21.64 49.09
Bra002904.1-P Field mustard extracellular, plasma membrane, vacuole 49.87 48.94
Bra026409.1-P Field mustard extracellular, plasma membrane, vacuole 49.33 48.48
CDX89312 Canola extracellular, plasma membrane, vacuole 49.33 48.48
CDX94294 Canola extracellular, plasma membrane, vacuole 49.33 48.48
AT5G55480.1 Thale cress plasma membrane 49.87 48.43
KRH46282 Soybean extracellular, plasma membrane 49.46 48.36
CDY36746 Canola plasma membrane 49.73 48.3
KRG98625 Soybean extracellular 46.77 48.2
CDY17323 Canola plasma membrane 49.6 48.05
KRH46279 Soybean extracellular 46.91 48.01
Bra028979.1-P Field mustard plasma membrane 49.33 47.91
AT4G26690.1 Thale cress extracellular, vacuole 48.79 47.83
KRG98622 Soybean extracellular, golgi, plasma membrane 48.12 47.8
Bra034040.1-P Field mustard extracellular 8.74 47.79
Bra004101.1-P Field mustard extracellular, plasma membrane, vacuole 47.58 47.64
Bra035244.1-P Field mustard plasma membrane 48.52 47.63
Bra019092.1-P Field mustard extracellular, plasma membrane, vacuole 45.7 47.42
CDY46687 Canola extracellular, plasma membrane, vacuole 45.56 47.28
CDY61647 Canola extracellular, plasma membrane 47.85 47.15
CDY13237 Canola extracellular, plasma membrane, vacuole 47.85 46.9
CDY11996 Canola plasma membrane 48.66 46.83
CDX92806 Canola extracellular, plasma membrane, vacuole 45.03 46.79
CDY45656 Canola extracellular, golgi, plasma membrane 40.86 46.55
CDY29432 Canola cytosol, peroxisome 37.23 46.48
CDY12605 Canola extracellular, vacuole 44.49 46.23
CDY72472 Canola mitochondrion 23.25 46.01
Bra034037.1-P Field mustard extracellular, vacuole 44.22 45.95
CDY19634 Canola plasma membrane 44.62 45.73
AT1G66970.2 Thale cress plasma membrane 48.12 45.61
CDY60410 Canola extracellular 8.33 45.59
CDX86807 Canola cytosol 13.98 45.22
CDY58867 Canola plasma membrane 43.01 44.32
AT3G20520.1 Thale cress plasma membrane 43.15 44.03
CDY12599 Canola cytosol 24.06 43.87
CDX82242 Canola cytosol 25.4 42.66
Bra035208.1-P Field mustard extracellular, golgi, plastid 15.59 42.49
PGSC0003DMT400033459 Potato endoplasmic reticulum 14.38 41.31
Bra035774.1-P Field mustard plasma membrane 45.3 41.25
CDY42328 Canola cytosol 14.25 41.09
CDX86766 Canola plasma membrane 34.95 41.07
CDY36036 Canola plasma membrane 43.82 38.4
Bra001790.1-P Field mustard plasma membrane 43.01 38.28
HORVU1Hr1G080970.22 Barley extracellular, plasma membrane 41.13 37.68
Bra035209.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 46.24 35.68
CDX86765 Canola extracellular, mitochondrion, vacuole 7.12 31.93
AT1G66980.2 Thale cress plasma membrane 47.58 30.86
CDY14478 Canola plasma membrane 46.37 26.26
CDY60415 Canola plasma membrane 41.53 26.05
HORVU2Hr1G032670.2 Barley cytosol 10.75 23.53
HORVU3Hr1G073870.1 Barley extracellular, golgi 11.56 21.99
HORVU6Hr1G074900.1 Barley cytosol 4.84 21.69
HORVU2Hr1G087820.3 Barley cytosol 8.87 21.36
HORVU1Hr1G024870.4 Barley cytosol 11.56 19.55
HORVU6Hr1G024750.1 Barley extracellular, vacuole 1.48 13.41
Protein Annotations
Gene3D:3.20.20.190MapMan:35.1EMBL:AK354553UniProt:F2CSF1GO:GO:0003674GO:GO:0003824
GO:GO:0006629GO:GO:0008081GO:GO:0008150GO:GO:0008152GO:GO:0016787InterPro:GP_PDE_dom
EnsemblPlantsGene:HORVU2Hr1G081920EnsemblPlants:HORVU2Hr1G081920.3InterPro:IPR017946InterPro:IPR030395PFAM:PF03009InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704PANTHER:PTHR43620PANTHER:PTHR43620:SF2SUPFAM:SSF51695SignalP:SignalP-noTMUniParc:UPI000200477D
SEG:seg:::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CSF1]
Coordinates
chrchr2H:+:594431527..594436359
Molecular Weight (calculated)
81034.5 Da
IEP (calculated)
4.931
GRAVY (calculated)
-0.019
Length
744 amino acids
Sequence
(BLAST)
001: MGSGRVCYVV ASVVLLWLGV ATAQGDSPWK TLSGNAPAII AKGGFSGLFP DSSEFAYQFA MIASSPDTVL YCDVRLTKDG LGVCLPDIKM DNCTNIPDFY
101: PKGKKSYLVN GVSTTGWFSV DYNGTELSQV SLKQAIFSRT PRFDPSFFPL LAVEDVASKF KPPGMWLNIQ HDDFYSQFNM SMRKYILSVS RRVIVDYISS
201: PEASFLTSIS GRISNNTKLV FRFLDEATLE PSTKDTYGSM LKNLTFIKTF ASGILVPKKY VWPVSPDNYL QMYTSIVDDA HKVGLEIYAA DFANDFALSY
301: NHSYDPLAES LSFIDNGAFS VDGILTDFPV TPSEAIGCFA NLNKSNTAHG KPLIISHNGA SGDYPGCTDL AYQKAVDDGA DVIDCPVQVT KDGIPVCMGS
401: INLMDGTTVA KSPFASQTAV MKDIESVLGV FTFNLTWDDI VKNLKPKIST PLSTFSLDRN PRYRNAGNFM RLSDFLDFSK DKDLSGIMIS IEHAAFLAAE
501: LGFDMVDAVI KALDDSGYNK QTAQKVMIQS TNSSVLVKFK QQTKYDLVYM INEDVSDAAP SSLAGIKKFA DAVSVETSSV FPENRHFTSH QTDLVESLQT
601: AGLSVYAYNL MNEFVSQPYD FFSDATAQII AYVQGAGVDG LITDFPATAR RYKSNTCMNM GNKTPSFMAP PRPGDLLQLI SKPAQPPALA PMPLLLDSDV
701: SEPPLPPARS NTATTAPAPS SARRTQTGIP FLVTLAMLCA WAAI
Best Arabidopsis Sequence Match ( AT5G55480.1 )
(BLAST)
001: MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
101: VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
201: SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
301: YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
401: QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
501: VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
601: SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
701: PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL
Arabidopsis Description
GDPDL4Glycerophosphodiester phosphodiesterase GDPDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ62]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.