Factsheet for AT5G55480.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002904.1-P	Field mustard	extracellular, plasma membrane, vacuole	83.03	83.91
CDY17323	Canola	plasma membrane	84.07	83.85
CDY45656	Canola	extracellular, golgi, plasma membrane	69.32	81.32
CDY36746	Canola	plasma membrane	78.2	78.2
Bra028979.1-P	Field mustard	plasma membrane	78.07	78.07
CDY11996	Canola	plasma membrane	75.72	75.03
AT4G26690.1	Thale cress	extracellular, vacuole	71.93	72.6
Bra035208.1-P	Field mustard	extracellular, golgi, plastid	24.93	69.96
CDY58867	Canola	plasma membrane	65.27	69.25
AT1G66970.2	Thale cress	plasma membrane	69.45	67.77
CDX86766	Canola	plasma membrane	53.39	64.61
VIT_19s0090g01490.t01	Wine grape	extracellular, plasma membrane, vacuole	56.4	57.07
Bra035209.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	71.67	56.95
PGSC0003DMT400033423	Potato	extracellular	9.66	56.49
Solyc07g065120.2.1	Tomato	extracellular	55.09	56.04
Solyc12g014570.1.1	Tomato	nucleus	54.7	55.79
KRH46281	Soybean	extracellular, golgi, plasma membrane	55.09	55.45
PGSC0003DMT400057418	Potato	extracellular	54.44	55.38
KRH73850	Soybean	endoplasmic reticulum	54.44	55.38
KRH14296	Soybean	endoplasmic reticulum	54.31	55.17
PGSC0003DMT400033463	Potato	extracellular, plasma membrane	54.05	54.98
KRH46282	Soybean	extracellular, plasma membrane	53.26	53.61
KRG98625	Soybean	extracellular	50.13	53.19
KRH46280	Soybean	cytosol	18.02	52.47
KRH46279	Soybean	extracellular	49.61	52.27
CDX86765	Canola	extracellular, mitochondrion, vacuole	11.23	51.81
KRG98622	Soybean	extracellular, golgi, plasma membrane	50.13	51.27
GSMUA_Achr8P25690_001	Banana	plasma membrane	50.26	50.66
TraesCS6A01G200600.1	Wheat	golgi	49.22	50.4
TraesCS6D01G189300.1	Wheat	unclear	48.96	50.2
TraesCS6B01G226700.2	Wheat	golgi	48.96	50.2
TraesCS2A01G330200.1	Wheat	extracellular, plasma membrane, vacuole	48.69	50.13
TraesCS2D01G332500.1	Wheat	golgi	48.56	50.0
HORVU2Hr1G081920.3	Barley	plasma membrane	48.43	49.87
TraesCS2B01G352000.1	Wheat	extracellular, plasma membrane, vacuole	48.3	49.73
Zm00001d050917_P002	Maize	plasma membrane	48.83	49.67
EES10974	Sorghum	golgi	48.56	49.67
GSMUA_Achr9P12610_001	Banana	endoplasmic reticulum, plasma membrane, plastid	50.78	49.49
EES05342	Sorghum	plasma membrane	48.56	49.4
HORVU6Hr1G052420.10	Barley	extracellular, plasma membrane	49.22	49.28
GSMUA_Achr1P16520_001	Banana	extracellular, plasma membrane	48.3	49.27
Zm00001d017036_P002	Maize	plasma membrane	48.69	48.32
AT3G20520.1	Thale cress	plasma membrane	45.17	47.46
TraesCS7A01G243900.3	Wheat	golgi	47.0	46.81
TraesCS7B01G147500.1	Wheat	unclear	46.48	46.11
PGSC0003DMT400033459	Potato	endoplasmic reticulum	15.27	45.17
Zm00001d025670_P001	Maize	mitochondrion	9.01	45.1
AT5G58050.1	Thale cress	extracellular, plasma membrane	44.26	45.02
KXG36695	Sorghum	plasma membrane	45.3	44.77
Zm00001d022153_P006	Maize	extracellular, mitochondrion	44.78	44.14
TraesCS7D01G242500.1	Wheat	golgi, plastid, unclear	46.61	44.07
Zm00001d052875_P001	Maize	mitochondrion	44.39	43.81
AT1G66980.2	Thale cress	plasma membrane	65.54	43.77
Zm00001d031412_P001	Maize	extracellular	42.56	43.76
AT5G58170.1	Thale cress	extracellular, plasma membrane	42.69	43.6
GSMUA_Achr3P03920_001	Banana	cytosol	43.99	42.66
OQU80956	Sorghum	cytosol	45.95	39.77
GSMUA_AchrUn_...	Banana	extracellular	8.49	39.63
Os02t0187300-01	Rice	endoplasmic reticulum, extracellular	1.83	38.89
AT1G74210.1	Thale cress	extracellular	10.97	21.43
AT5G08030.2	Thale cress	golgi	9.53	18.86

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	EntrezGene:835641	ProteinID:AED96633.1	ArrayExpress:AT5G55480	EnsemblPlantsGene:AT5G55480
RefSeq:AT5G55480	TAIR:AT5G55480	RefSeq:AT5G55480-TAIR-G	EnsemblPlants:AT5G55480.1	TAIR:AT5G55480.1	Unigene:At.6905
ProteinID:BAB08565.1	EMBL:BT015819	EMBL:BT020207	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0006071	GO:GO:0006629	GO:GO:0007275
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0008889	GO:GO:0009506	GO:GO:0009653
GO:GO:0009791	GO:GO:0009987	GO:GO:0010026	GO:GO:0010442	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0030154	GO:GO:0031225	GO:GO:0046658	GO:GO:0052541
GO:GO:0071555	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395	RefSeq:NP_200359.1	PFAM:PF03009
InterPro:PLC-like_Pdiesterase_TIM-brl	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0005013
PO:PO:0005052	PO:PO:0006085	PO:PO:0006504	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009001	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009015
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF1	UniProt:Q9FJ62
SUPFAM:SSF51695	Symbol:SVL1	TMHMM:TMhelix	UniParc:UPI00000A9242	SEG:seg	:

Description

GDPDL4Glycerophosphodiester phosphodiesterase GDPDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ62]

Coordinates

chr5:+:22474142..22478216

Molecular Weight (calculated)

84169.0 Da

IEP (calculated)

5.317

GRAVY (calculated)

-0.045

Length

766 amino acids

Sequence
(BLAST)

001: MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
101: VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
201: SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
301: YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
401: QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
501: VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
601: SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
701: PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.