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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • vacuole 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:nucleus, secretory
BaCelLo:nucleus
EpiLoc:golgi
MultiLoc:vacuole
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra015910.1-P Field mustard endoplasmic reticulum 21.47 100.0
Bra035208.1-P Field mustard extracellular, golgi, plastid 25.31 89.38
CDX86766 Canola plasma membrane 56.43 85.94
Bra028979.1-P Field mustard plasma membrane 58.82 74.02
Bra002904.1-P Field mustard extracellular, plasma membrane, vacuole 57.68 73.35
AT5G55480.1 Thale cress plasma membrane 56.95 71.67
CDX86765 Canola extracellular, mitochondrion, vacuole 11.62 67.47
Bra019073.1-P Field mustard extracellular, plasma membrane, plastid 32.47 62.6
Bra026409.1-P Field mustard extracellular, plasma membrane, vacuole 47.61 60.63
Bra019092.1-P Field mustard extracellular, plasma membrane, vacuole 44.92 60.39
Bra004101.1-P Field mustard extracellular, plasma membrane, vacuole 45.95 59.62
Bra035244.1-P Field mustard plasma membrane 46.37 58.97
Bra034037.1-P Field mustard extracellular, vacuole 43.15 58.1
Bra034040.1-P Field mustard extracellular 8.09 57.35
PGSC0003DMT400033423 Potato extracellular 7.37 54.2
KRH46280 Soybean cytosol 14.21 52.09
KRH73850 Soybean endoplasmic reticulum 40.04 51.26
KRH14296 Soybean endoplasmic reticulum 39.83 50.93
Solyc12g014570.1.1 Tomato nucleus 39.63 50.87
VIT_19s0090g01490.t01 Wine grape extracellular, plasma membrane, vacuole 39.94 50.86
Solyc07g065120.2.1 Tomato extracellular 39.42 50.46
KRH46281 Soybean extracellular, golgi, plasma membrane 39.83 50.46
PGSC0003DMT400057418 Potato extracellular 39.32 50.33
PGSC0003DMT400033463 Potato extracellular, plasma membrane 38.9 49.8
KRH46282 Soybean extracellular, plasma membrane 38.69 49.01
KRG98625 Soybean extracellular 35.89 47.92
KRG98622 Soybean extracellular, golgi, plasma membrane 36.93 47.53
GSMUA_Achr8P25690_001 Banana plasma membrane 37.45 47.5
KRH46279 Soybean extracellular 35.58 47.18
TraesCS6A01G200600.1 Wheat golgi 36.41 46.93
TraesCS6D01G189300.1 Wheat unclear 36.31 46.85
TraesCS6B01G226700.2 Wheat golgi 36.1 46.59
HORVU2Hr1G081920.3 Barley plasma membrane 35.68 46.24
TraesCS2A01G330200.1 Wheat extracellular, plasma membrane, vacuole 35.68 46.24
TraesCS2B01G352000.1 Wheat extracellular, plasma membrane, vacuole 35.68 46.24
TraesCS2D01G332500.1 Wheat golgi 35.68 46.24
Zm00001d050917_P002 Maize plasma membrane 35.89 45.95
EES10974 Sorghum golgi 35.68 45.93
HORVU6Hr1G052420.10 Barley extracellular, plasma membrane 36.41 45.88
GSMUA_Achr9P12610_001 Banana endoplasmic reticulum, plasma membrane, plastid 37.34 45.8
EES05342 Sorghum plasma membrane 35.48 45.42
GSMUA_Achr1P16520_001 Banana extracellular, plasma membrane 35.06 45.01
TraesCS7A01G243900.3 Wheat golgi 34.96 43.82
Zm00001d025670_P001 Maize mitochondrion 6.95 43.79
Zm00001d017036_P002 Maize plasma membrane 35.06 43.78
KXG36695 Sorghum plasma membrane 34.44 42.84
TraesCS7B01G147500.1 Wheat unclear 34.02 42.49
Zm00001d022153_P006 Maize extracellular, mitochondrion 33.92 42.08
Zm00001d052875_P001 Maize mitochondrion 33.82 42.01
GSMUA_Achr3P03920_001 Banana cytosol 34.02 41.52
Bra035774.1-P Field mustard plasma membrane 35.06 41.37
TraesCS7D01G242500.1 Wheat golgi, plastid, unclear 34.54 41.11
GSMUA_AchrUn_... Banana extracellular 6.95 40.85
Zm00001d031412_P001 Maize extracellular 31.33 40.54
Bra001790.1-P Field mustard plasma membrane 35.06 40.43
Bra002676.1-P Field mustard extracellular, golgi, plasma membrane 31.54 40.26
Bra020384.1-P Field mustard extracellular, plasma membrane 31.12 39.68
OQU80956 Sorghum cytosol 36.41 39.66
Bra020395.1-P Field mustard plasma membrane 30.5 39.36
Bra006785.1-P Field mustard extracellular, plasma membrane 31.54 39.23
PGSC0003DMT400033459 Potato endoplasmic reticulum 10.27 38.22
Os02t0187300-01 Rice endoplasmic reticulum, extracellular 1.35 36.11
Bra003814.1-P Field mustard golgi 8.51 20.97
Bra015928.1-P Field mustard extracellular, golgi, vacuole 8.51 20.87
Bra009316.1-P Field mustard extracellular, vacuole 7.99 20.7
Bra003813.1-P Field mustard cytosol 8.2 19.17
Protein Annotations
Gene3D:3.20.20.190MapMan:35.1EnsemblPlantsGene:Bra035209EnsemblPlants:Bra035209.1EnsemblPlants:Bra035209.1-PInterPro:DUF962
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0008081GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787InterPro:GP_PDE_domInterPro:IPR017946
InterPro:IPR030395UniProt:M4F2B1PFAM:PF03009PFAM:PF06127InterPro:PLC-like_Pdiesterase_TIM-brlPFscan:PS51704
PANTHER:PTHR43620PANTHER:PTHR43620:SF1SUPFAM:SSF51695TMHMM:TMhelixUniParc:UPI0002546932SEG:seg
Description
AT5G55480 (E=9e-272) SVL1 | SVL1 (SHV3-LIKE 1); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase
Coordinates
chrA08:-:9146084..9152237
Molecular Weight (calculated)
107178.0 Da
IEP (calculated)
6.559
GRAVY (calculated)
0.060
Length
964 amino acids
Sequence
(BLAST)
001: MSNRIGLLDL EKHFAFYGAY HSNRVNIIIH TLFVWPNVFA TLLFLYSTQP ILDRSYLGFI EALTFDGVLR LDTGFILTVI YAVFYIYLDN KSGVLAALLC
101: FSCWIGSSFL AARLGHSLTL KVGVASQLLC WTGQFLGHGL FEKRAPALLD NLVQAFLMGP YFVLLEVLQS GFGYEPYPGF KSRVDCKIEN DIKEWNEEKL
201: KKKKKLMDNS ASPMITYMQD NPSMFRLRAS KFLLLSVLIL SQFLSTQLLA QRSKSPWQTL TGEAPLVIAR GGFSGLFPDS SVTAYSFVSA TSVPDAVLWC
301: DVQLTKDGVG ICFPDVTMYK DSNVQDAYPK RKNSYLLNGV PTQDWFTIDF TSKDLKSVFL IRGILSRSPA FDDNRNVIST VENIATQFKP AGFWLNVQHD
401: AFYAQHNLSM SGFLLSVSKT VTIDYLSSPE LKFFRDIGSR FGKTGPKFVF RFLEKDDVEV STNQTYGSLM TNLTFIKTFA SGVLVPKSYI WPVDKDQYLL
501: PHTTFVQDAH KAGLQVYASG FANDFDLAYN YSYDPLAEYL AFMDNGNFSV DGVVSDFPLT ASSAVDCFSH LGSNASSTQG DFFVISKNGA SGDYPGCSDL
601: AYSKAIEDGA DIIDCAIQMS SDGIPFCLNS SNLLEGTNVF QSPFINRSST VPEIAPHAGI YSFSLRWSEI KTLRLAMTHP YSLGFNLFRN PREKSSEKIV
701: PLYDFLILAN KSSSLVGVLI SVENVAYLRG KQGIDVVKEV LYAFKEACCI DATKRVMIQS SNSPVLVDFK KQSPYEIVYQ VEENVGDIVD SAIEEIKKFA
801: DAVVVSRRSV YSTSNFFLSG QTHLVEKLHK FNLPVYVKTF RNEFVSQPWD FFSDATVEIN TYVAGAGNRC LTRKDHPPYM PLVKPAGLLG FVNHDSPHPA
901: FTADDVTEPP LPPVTFRTPP NIPGPLSTDE KAPNSKTRLT PPLLLPALAM ALASLLLLSS LSIL
Best Arabidopsis Sequence Match ( AT5G55480.1 )
(BLAST)
001: MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
101: VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
201: SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
301: YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
401: QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
501: VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
601: SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
701: PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL
Arabidopsis Description
GDPDL4Glycerophosphodiester phosphodiesterase GDPDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ62]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.