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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:golgi
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 19658398 doi
S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH14296 Soybean endoplasmic reticulum 94.29 94.16
KRH46281 Soybean extracellular, golgi, plasma membrane 68.92 68.2
KRH46282 Soybean extracellular, plasma membrane 67.86 67.15
KRG98622 Soybean extracellular, golgi, plasma membrane 65.74 66.09
KRH46280 Soybean cytosol 22.31 63.88
VIT_19s0090g01490.t01 Wine grape extracellular, plasma membrane, vacuole 61.62 61.29
KRG98625 Soybean extracellular 57.64 60.11
KRH46279 Soybean extracellular 56.84 58.87
PGSC0003DMT400033423 Potato extracellular 10.23 58.78
Solyc12g014570.1.1 Tomato nucleus 58.3 58.46
PGSC0003DMT400033463 Potato extracellular, plasma membrane 57.9 57.9
PGSC0003DMT400057418 Potato extracellular 57.1 57.1
Solyc07g065120.2.1 Tomato extracellular 56.97 56.97
Bra002904.1-P Field mustard extracellular, plasma membrane, vacuole 56.71 56.33
AT4G26690.1 Thale cress extracellular, vacuole 56.57 56.13
Bra019073.1-P Field mustard extracellular, plasma membrane, plastid 37.18 56.0
CDY17323 Canola plasma membrane 56.84 55.73
Bra019092.1-P Field mustard extracellular, plasma membrane, vacuole 52.72 55.37
AT1G66970.2 Thale cress plasma membrane 57.64 55.29
CDY46687 Canola extracellular, plasma membrane, vacuole 52.59 55.23
Bra026409.1-P Field mustard extracellular, plasma membrane, vacuole 55.11 54.82
CDX92806 Canola extracellular, plasma membrane, vacuole 52.06 54.75
CDX89312 Canola extracellular, plasma membrane, vacuole 54.98 54.69
CDY45656 Canola extracellular, golgi, plasma membrane 47.41 54.67
CDY61647 Canola extracellular, plasma membrane 54.71 54.57
CDX94294 Canola extracellular, plasma membrane, vacuole 54.85 54.56
AT5G55480.1 Thale cress plasma membrane 55.38 54.44
GSMUA_Achr8P25690_001 Banana plasma membrane 54.58 54.08
Bra004101.1-P Field mustard extracellular, plasma membrane, vacuole 53.12 53.84
CDY36746 Canola plasma membrane 54.71 53.79
Bra028979.1-P Field mustard plasma membrane 54.71 53.79
CDY13237 Canola extracellular, plasma membrane, vacuole 54.05 53.62
CDY12605 Canola extracellular, vacuole 50.86 53.49
CDY72472 Canola mitochondrion 26.69 53.46
Bra035244.1-P Field mustard plasma membrane 53.78 53.43
Bra034037.1-P Field mustard extracellular, vacuole 50.73 53.35
Zm00001d050917_P002 Maize plasma membrane 52.99 52.99
EES10974 Sorghum golgi 52.59 52.87
TraesCS2B01G352000.1 Wheat extracellular, plasma membrane, vacuole 52.06 52.69
TraesCS2D01G332500.1 Wheat golgi 52.06 52.69
TraesCS2A01G330200.1 Wheat extracellular, plasma membrane, vacuole 51.93 52.55
TraesCS6D01G189300.1 Wheat unclear 52.06 52.48
TraesCS6B01G226700.2 Wheat golgi 51.93 52.34
HORVU2Hr1G081920.3 Barley plasma membrane 51.66 52.28
TraesCS6A01G200600.1 Wheat golgi 51.79 52.14
EES05342 Sorghum plasma membrane 52.06 52.06
HORVU6Hr1G052420.10 Barley extracellular, plasma membrane 52.72 51.9
CDY29432 Canola cytosol, peroxisome 40.9 51.68
CDY11996 Canola plasma membrane 52.99 51.62
CDY12599 Canola cytosol 27.89 51.47
GSMUA_Achr9P12610_001 Banana endoplasmic reticulum, plasma membrane, plastid 53.25 51.02
CDY60410 Canola extracellular 9.16 50.74
GSMUA_Achr1P16520_001 Banana extracellular, plasma membrane 50.6 50.73
Zm00001d017036_P002 Maize plasma membrane 51.53 50.26
CDY19634 Canola plasma membrane 48.21 50.0
CDY42328 Canola cytosol 17.0 49.61
TraesCS7A01G243900.3 Wheat golgi 50.2 49.15
CDX86807 Canola cytosol 15.01 49.13
AT3G20520.1 Thale cress plasma membrane 47.54 49.11
CDY58867 Canola plasma membrane 46.88 48.89
PGSC0003DMT400033459 Potato endoplasmic reticulum 16.73 48.65
TraesCS7B01G147500.1 Wheat unclear 49.0 47.8
Bra035208.1-P Field mustard extracellular, golgi, plastid 17.26 47.62
CDX82242 Canola cytosol 27.89 47.4
Bra034040.1-P Field mustard extracellular 8.5 47.06
KXG36695 Sorghum plasma membrane 47.68 46.32
Zm00001d025670_P001 Maize mitochondrion 9.3 45.75
Bra035774.1-P Field mustard plasma membrane 49.4 45.53
Zm00001d052875_P001 Maize mitochondrion 46.88 45.49
TraesCS7D01G242500.1 Wheat golgi, plastid, unclear 48.87 45.43
Zm00001d022153_P006 Maize extracellular, mitochondrion 46.75 45.3
GSMUA_Achr3P03920_001 Banana cytosol 47.14 44.94
CDX86766 Canola plasma membrane 37.72 44.87
GSMUA_AchrUn_... Banana extracellular 9.56 43.9
Zm00001d031412_P001 Maize extracellular 42.5 42.95
CDY36036 Canola plasma membrane 47.54 42.17
Bra001790.1-P Field mustard plasma membrane 46.61 41.99
Os02t0187300-01 Rice endoplasmic reticulum, extracellular 1.99 41.67
KRH20083 Soybean plasma membrane 41.57 40.97
KRH03081 Soybean extracellular, plasma membrane 41.57 40.97
OQU80956 Sorghum cytosol 47.68 40.56
Bra035209.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 51.26 40.04
AT1G66980.2 Thale cress plasma membrane 53.78 35.31
CDX86765 Canola extracellular, mitochondrion, vacuole 7.44 33.73
CDY14478 Canola plasma membrane 52.72 30.21
CDY60415 Canola plasma membrane 46.75 29.68
KRH03139 Soybean extracellular, golgi 11.55 22.42
KRH56805 Soybean nucleus 11.55 22.19
Protein Annotations
EntrezGene:100811399Gene3D:3.20.20.190MapMan:35.1EMBL:ACUP02001288EnsemblPlantsGene:GLYMA_02G296400GO:GO:0003674
GO:GO:0003824GO:GO:0006629GO:GO:0008081GO:GO:0008150GO:GO:0008152GO:GO:0016787
InterPro:GP_PDE_domUniProt:I1JJF7InterPro:IPR017946InterPro:IPR030395EnsemblPlants:KRH73850ProteinID:KRH73850
ProteinID:KRH73850.1PFAM:PF03009InterPro:PLC-like_Pdiesterase_TIM-brlPFscan:PS51704PANTHER:PTHR43620PANTHER:PTHR43620:SF1
SUPFAM:SSF51695SignalP:SignalP-noTMUniParc:UPI0002337472SEG:seg::
Description
hypothetical protein
Coordinates
chr2:+:47417971..47425008
Molecular Weight (calculated)
81848.5 Da
IEP (calculated)
6.039
GRAVY (calculated)
0.047
Length
753 amino acids
Sequence
(BLAST)
001: MWNPRALSAP LALLLLHSLL ALISAQRSTW NTLSGGAPLV VARGGFSGML PDSSDASYNL AVITSGPDVY IWCDVQLTKD GLGICQPDIN LANSTYIASA
101: YPNKTTSYLV NGVPTRGYFP LDYTLKDLSS VVLTQGVYSR SNLFDGNNFG ILTVEDLAKL RQKPKGKWLN IQHDAFYAQH NLSMRSFVLS VSRKVVFSYI
201: SSPEVGFLRS IASRFNPKTT KLVFRFMGLS DVDPSTNRTY GSLLQNLTFI KTFASGILVP KGYIWPVDAT LYLQSHTSLV SDAHKAGLEV FASDFVNDVP
301: FSFNYSYDPL AEYLQFVDNG DFSVDGVLSD FPITPFEAIG CFAHLGTNAT KKDKTLVISK YGASGDYPAC TDLAYNKAIS DGVDVLDCPV QMSKDGTPFC
401: LNSIDLIEST TVAQSSFSKF AMTIPEIKSG IGIFAFNLTW NDIKSLTPSI LNPFAKYRLF RNPRSKNAGT LLALSDFLSL TKNQTSLSGV AIIVENAAYL
501: ADKQGLSVID AVIGALSKAG YDKPGSQKVY IQSTNSSVLL KFKEKTSYEL VYKIDETIGD AANAAVEDIK SFASSVVVNK DSIIPNNDQF LTAYTNIVPK
601: LKNASLSVFV ETFSNEFVSQ AWDFFSDATV EINTYITGAQ IDGIITDFPK TADRYRRNKC LGLGDNKPTY MEPVQPGSLF GLITKEFLPP AEAPFPPLTE
701: SEVAEPPLPP VAKIAPASSP NAGTKSPQGN SQPKVTVCFF LSTLAVFIAS LLL
Best Arabidopsis Sequence Match ( AT1G66970.1 )
(BLAST)
001: MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL
Arabidopsis Description
SVL2SHV3-like 2 [Source:UniProtKB/TrEMBL;Acc:F4HQ30]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.