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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 7
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:vacuole
 extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g065120.2.1 Tomato extracellular 94.42 94.42
PGSC0003DMT400033423 Potato extracellular 12.48 71.76
PGSC0003DMT400033463 Potato extracellular, plasma membrane 69.85 69.85
PGSC0003DMT400033459 Potato endoplasmic reticulum 21.65 62.93
VIT_19s0090g01490.t01 Wine grape extracellular, plasma membrane, vacuole 60.16 59.84
KRH46280 Soybean cytosol 20.45 58.56
KRH14296 Soybean endoplasmic reticulum 57.37 57.29
KRH73850 Soybean endoplasmic reticulum 57.1 57.1
CDY60410 Canola extracellular 10.23 56.62
Bra002904.1-P Field mustard extracellular, plasma membrane, vacuole 56.31 55.94
Bra019092.1-P Field mustard extracellular, plasma membrane, vacuole 53.12 55.79
CDY46687 Canola extracellular, plasma membrane, vacuole 52.99 55.65
KRH46281 Soybean extracellular, golgi, plasma membrane 56.04 55.45
CDX92806 Canola extracellular, plasma membrane, vacuole 52.72 55.45
CDY61647 Canola extracellular, plasma membrane 55.38 55.23
CDY17323 Canola plasma membrane 56.31 55.21
CDX94294 Canola extracellular, plasma membrane, vacuole 55.25 54.95
Bra004101.1-P Field mustard extracellular, plasma membrane, vacuole 53.92 54.64
KRH46279 Soybean extracellular 52.72 54.61
Bra019073.1-P Field mustard extracellular, plasma membrane, plastid 36.26 54.6
Bra026409.1-P Field mustard extracellular, plasma membrane, vacuole 54.85 54.56
AT4G26690.1 Thale cress extracellular, vacuole 54.98 54.55
AT5G55480.1 Thale cress plasma membrane 55.38 54.44
KRG98625 Soybean extracellular 52.19 54.43
CDX89312 Canola extracellular, plasma membrane, vacuole 54.71 54.43
CDY45656 Canola extracellular, golgi, plasma membrane 47.14 54.36
Bra035244.1-P Field mustard plasma membrane 54.58 54.22
CDY13237 Canola extracellular, plasma membrane, vacuole 54.18 53.75
KRH46282 Soybean extracellular, plasma membrane 54.32 53.75
TraesCS2A01G330200.1 Wheat extracellular, plasma membrane, vacuole 52.99 53.63
TraesCS2D01G332500.1 Wheat golgi 52.72 53.36
TraesCS2B01G352000.1 Wheat extracellular, plasma membrane, vacuole 52.59 53.23
HORVU2Hr1G081920.3 Barley plasma membrane 52.59 53.23
TraesCS6A01G200600.1 Wheat golgi 52.32 52.67
CDY12605 Canola extracellular, vacuole 50.07 52.65
Bra034037.1-P Field mustard extracellular, vacuole 50.07 52.65
GSMUA_Achr8P25690_001 Banana plasma membrane 52.99 52.5
CDY36746 Canola plasma membrane 53.39 52.48
Bra028979.1-P Field mustard plasma membrane 53.39 52.48
Bra034040.1-P Field mustard extracellular 9.43 52.21
TraesCS6D01G189300.1 Wheat unclear 51.53 51.94
GSMUA_Achr1P16520_001 Banana extracellular, plasma membrane 51.79 51.93
AT1G66970.2 Thale cress plasma membrane 53.92 51.72
TraesCS6B01G226700.2 Wheat golgi 51.13 51.54
EES10974 Sorghum golgi 51.26 51.54
KRG98622 Soybean extracellular, golgi, plasma membrane 51.0 51.27
CDY72472 Canola mitochondrion 25.5 51.06
CDX86807 Canola cytosol 15.54 50.87
CDY11996 Canola plasma membrane 52.06 50.71
GSMUA_Achr9P12610_001 Banana endoplasmic reticulum, plasma membrane, plastid 52.46 50.25
Zm00001d050917_P002 Maize plasma membrane 50.2 50.2
HORVU6Hr1G052420.10 Barley extracellular, plasma membrane 50.73 49.93
EES05342 Sorghum plasma membrane 49.93 49.93
Bra035208.1-P Field mustard extracellular, golgi, plastid 17.8 49.08
Zm00001d017036_P002 Maize plasma membrane 50.07 48.83
CDY29432 Canola cytosol, peroxisome 38.25 48.32
CDY12599 Canola cytosol 26.16 48.28
CDY58867 Canola plasma membrane 45.95 47.92
AT3G20520.1 Thale cress plasma membrane 46.35 47.87
CDY19634 Canola plasma membrane 45.68 47.38
TraesCS7B01G147500.1 Wheat unclear 48.34 47.15
TraesCS7A01G243900.3 Wheat golgi 47.54 46.55
CDY42328 Canola cytosol 15.94 46.51
Zm00001d025670_P001 Maize mitochondrion 9.43 46.41
TraesCS7D01G242500.1 Wheat golgi, plastid, unclear 48.61 45.19
CDX86766 Canola plasma membrane 37.58 44.71
KXG36695 Sorghum plasma membrane 45.95 44.65
GSMUA_AchrUn_... Banana extracellular 9.69 44.51
CDX82242 Canola cytosol 26.16 44.47
GSMUA_Achr3P03920_001 Banana cytosol 46.08 43.92
Zm00001d022153_P006 Maize extracellular, mitochondrion 45.02 43.63
Bra035774.1-P Field mustard plasma membrane 46.35 42.72
Zm00001d052875_P001 Maize mitochondrion 43.56 42.27
CDY36036 Canola plasma membrane 47.28 41.93
Os02t0187300-01 Rice endoplasmic reticulum, extracellular 1.99 41.67
Zm00001d031412_P001 Maize extracellular 41.17 41.61
Bra001790.1-P Field mustard plasma membrane 45.68 41.15
OQU80956 Sorghum cytosol 46.75 39.77
Bra035209.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 50.33 39.32
PGSC0003DMT400008464 Potato cytosol 36.92 37.67
PGSC0003DMT400008461 Potato cytosol 37.85 37.06
CDX86765 Canola extracellular, mitochondrion, vacuole 7.97 36.14
AT1G66980.2 Thale cress plasma membrane 52.06 34.18
CDY14478 Canola plasma membrane 51.93 29.76
CDY60415 Canola plasma membrane 45.82 29.09
PGSC0003DMT400010411 Potato extracellular, golgi 10.89 20.97
Protein Annotations
EntrezGene:102595856Gene3D:3.20.20.190MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0006629GO:GO:0008081GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021
GO:GO:0016787InterPro:GP_PDE_domInterPro:IPR017946InterPro:IPR030395UniProt:M1C102PFAM:PF03009
EnsemblPlantsGene:PGSC0003DMG400022294PGSC:PGSC0003DMG400022294EnsemblPlants:PGSC0003DMT400057418InterPro:PLC-like_Pdiesterase_TIM-brlPFscan:PS51704PANTHER:PTHR43620
PANTHER:PTHR43620:SF1SUPFAM:SSF51695SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00029555BFRefSeq:XP_006346174.1
SEG:seg:::::
Description
Glycerophosphodiesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400022294]
Coordinates
chr7:+:55253515..55261008
Molecular Weight (calculated)
82095.4 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.035
Length
753 amino acids
Sequence
(BLAST)
001: MRKMRSVLCL LLLCCSAAFV AAQRSSNVTS KWKTLSGDAP KVIARGGFSG LLPDSSYNAY LLAQAISLAD WVAWCDVQLT KDGVGICFPD IKLNNASDID
101: TLYLNRNNNY SVNGIPQTGW FSIDFNIKDL APVSLKQGVY SRSPRFDGTP QQILTVQDVA TQVKPPGLWL NIQHDSFYSQ HNLSMRSFVI SLSRSVIANY
201: ISSPEVNFLR SIASRLNPRV TKRVFRFLNE DDIEPSTSQT YGSLVKNLTF IKTFAAGILV PKHYIWPMDS SLYLQPHTSV VSDAHKEGLE IYAADFVNDV
301: PFAYNYSYDP VAEYLSFIDN GEFSVDGVLS DFPMSPSASV DCFSHLGAND KPQVKLQIIT PQGASGEYPG CTDLAYTKAA SDGADILGCP VQMTKDGIPF
401: CLGSINLIDT TTAAQSPFSD IATTVPELQI TDGILTINLN WSDIQTLKPA ISTRYSDYSL SRNPKARNDG NFMSLADFLT FSKNANVSGV LISIENAAYL
501: AKQGLGVTDA VSDALSTAGY NNQTAKKVMI QSNDSSVLEE FKKSSYELVY LVDEDISDIK NSTLLEIKTF AKSVVITKNS VFPSEGAFII GQTNVVQKLQ
601: SANLPVYVRL FNNEFVSQAW DFFSDSSTEL NNYVLGAGVD GLVTEYPGTA ARYRRNRCLA YKDLPSYMSP VQPGSLLGLM TVQSMPPVEP PNPVLDVSDV
701: TEPPLPPVAK INPSNDNGST ARPPTTAPNG QSSIVASILM SSVAVLLAIF MVY
Best Arabidopsis Sequence Match ( AT5G55480.1 )
(BLAST)
001: MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
101: VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
201: SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
301: YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
401: QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
501: VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
601: SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
701: PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL
Arabidopsis Description
GDPDL4Glycerophosphodiester phosphodiesterase GDPDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ62]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.