Factsheet for TraesCS6B01G226700.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G189300.1	Wheat	unclear	97.99	97.99
TraesCS6A01G200600.1	Wheat	golgi	97.86	97.73
HORVU6Hr1G052420.10	Barley	extracellular, plasma membrane	91.3	89.15
Os02t0588500-02	Rice	extracellular	73.63	73.43
Zm00001d050917_P002	Maize	plasma membrane	73.49	72.91
EES05342	Sorghum	plasma membrane	72.42	71.85
Zm00001d017036_P002	Maize	plasma membrane	72.42	70.08
TraesCS2B01G352000.1	Wheat	extracellular, plasma membrane, vacuole	68.14	68.41
GSMUA_Achr8P25690_001	Banana	plasma membrane	58.77	57.76
GSMUA_Achr9P12610_001	Banana	endoplasmic reticulum, plasma membrane, plastid	59.04	56.11
TraesCS7B01G147500.1	Wheat	unclear	54.89	53.11
PGSC0003DMT400033423	Potato	extracellular	9.24	52.67
KRH46280	Soybean	cytosol	18.34	52.09
Solyc07g065120.2.1	Tomato	extracellular	52.48	52.06
KRH14296	Soybean	endoplasmic reticulum	52.48	51.99
KRH73850	Soybean	endoplasmic reticulum	52.34	51.93
GSMUA_Achr3P03920_001	Banana	cytosol	54.08	51.14
PGSC0003DMT400057418	Potato	extracellular	51.54	51.13
Bra019073.1-P	Field mustard	extracellular, plasma membrane, plastid	34.14	51.0
CDY71959	Canola	extracellular, plastid, vacuole	22.22	50.61
VIT_19s0090g01490.t01	Wine grape	extracellular, plasma membrane, vacuole	50.74	50.07
Solyc12g014570.1.1	Tomato	nucleus	49.8	49.53
Bra002904.1-P	Field mustard	extracellular, plasma membrane, vacuole	50.07	49.34
PGSC0003DMT400033463	Potato	extracellular, plasma membrane	49.67	49.27
KRH46281	Soybean	extracellular, golgi, plasma membrane	50.07	49.15
KRH46282	Soybean	extracellular, plasma membrane	49.93	49.01
AT5G55480.1	Thale cress	plasma membrane	50.2	48.96
CDY17323	Canola	plasma membrane	50.07	48.7
CDY36746	Canola	plasma membrane	49.93	48.69
Bra028979.1-P	Field mustard	plasma membrane	49.8	48.56
CDX94294	Canola	extracellular, plasma membrane, vacuole	49.0	48.35
Bra026409.1-P	Field mustard	extracellular, plasma membrane, vacuole	49.0	48.35
Bra004101.1-P	Field mustard	extracellular, plasma membrane, vacuole	48.06	48.32
KRH46279	Soybean	extracellular	46.99	48.28
CDX89312	Canola	extracellular, plasma membrane, vacuole	48.86	48.22
KRG98625	Soybean	extracellular	46.45	48.06
AT4G26690.1	Thale cress	extracellular, vacuole	48.73	47.96
CDY61647	Canola	extracellular, plasma membrane	48.46	47.95
KRG98622	Soybean	extracellular, golgi, plasma membrane	48.06	47.93
Bra035244.1-P	Field mustard	plasma membrane	48.06	47.36
CDY12605	Canola	extracellular, vacuole	45.25	47.21
CDY45656	Canola	extracellular, golgi, plasma membrane	41.23	47.17
CDY46687	Canola	extracellular, plasma membrane, vacuole	45.11	47.0
Bra019092.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.11	47.0
Bra034037.1-P	Field mustard	extracellular, vacuole	44.98	46.93
CDY11996	Canola	plasma membrane	48.46	46.83
CDY72472	Canola	mitochondrion	23.43	46.54
CDY13237	Canola	extracellular, plasma membrane, vacuole	47.26	46.51
CDX92806	Canola	extracellular, plasma membrane, vacuole	44.58	46.51
AT1G66970.2	Thale cress	plasma membrane	48.33	45.99
CDY29432	Canola	cytosol, peroxisome	36.55	45.81
CDY60410	Canola	extracellular	8.3	45.59
Bra035208.1-P	Field mustard	extracellular, golgi, plastid	16.47	45.05
CDY19634	Canola	plasma membrane	43.37	44.63
CDY58867	Canola	plasma membrane	42.7	44.18
Bra034040.1-P	Field mustard	extracellular	8.03	44.12
CDY12599	Canola	cytosol	23.96	43.87
AT3G20520.1	Thale cress	plasma membrane	42.7	43.76
CDX86807	Canola	cytosol	13.12	42.61
CDX82242	Canola	cytosol	25.17	42.44
CDY42328	Canola	cytosol	14.46	41.86
TraesCS6B01G202700.1	Wheat	extracellular, plasma membrane	41.23	41.12
Bra035774.1-P	Field mustard	plasma membrane	44.58	40.76
CDX86766	Canola	plasma membrane	34.4	40.6
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	40.83	40.08
Bra001790.1-P	Field mustard	plasma membrane	43.51	38.88
CDY36036	Canola	plasma membrane	44.04	38.75
PGSC0003DMT400033459	Potato	endoplasmic reticulum	12.99	37.45
Bra035209.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	46.59	36.1
CDX86765	Canola	extracellular, mitochondrion, vacuole	7.36	33.13
AT1G66980.2	Thale cress	plasma membrane	47.52	30.95
CDY14478	Canola	plasma membrane	47.12	26.79
CDY60415	Canola	plasma membrane	40.83	25.72
TraesCS2B01G202800.1	Wheat	extracellular, golgi	12.45	25.27
TraesCS3B01G333600.1	Wheat	extracellular, golgi	12.85	24.55
TraesCS1B01G133300.1	Wheat	extracellular	11.11	21.73
TraesCS1B01G133400.2	Wheat	extracellular	10.84	20.98

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF2	SUPFAM:SSF51695
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G226700	EnsemblPlants:TraesCS6B01G226700.2	TIGR:cd08603	TIGR:cd08604
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:348703897..348708257

Molecular Weight (calculated)

80520.1 Da

IEP (calculated)

5.855

GRAVY (calculated)

0.036

Length

747 amino acids

Sequence
(BLAST)

001: MGRSGHACSV LGSLLLLLLL LGPAAAQKGS TWKTLSGDAP AVIAKGGFSG LFPDSSDPAY SFAVSNQDSA QWCDVRLTKD GVGICLPDIK MDNCTTISDL
101: FPKGKKTYRV NGVSTTGWFS VDYNSIDLTN VTLLRAILSR TNRFDGSFTL VQVEVALSQY KAPAWLNVQH DSFYSQFNLS MRSYILSMSK QYTVDYISSP
201: EVSFLKSLVG RVGRKTKLVF RFLDEGLVEP STNQTYGSML KNLSSVKTFA SGILVPKHYI WPVTADNYLQ PSTSVVDDAH KAGLEIYAAD FANDFALSYN
301: YSYDPLAEYL RFIDNGAFCV DGLLTDFPIT PLEAIGCFSN LNNTKADHGA PLVISHNGAS GDYPDCTDLA YQKAVVDGAD VIDCDVQVTK DGIPICMSSI
401: DLMDVTTVAS SQFASQAGVI SDIKAVAGVY TFNLTWEDIA NNLKPMISNP FGQIGLSRNP RNRNAGKFMR LSDFLAFAKG KDLSGIMITV EHASFMAEKL
501: GFGVVDAVIK AVDDSGYSKQ SAQKVMIQST NSSTLVKFKQ LAKYNLVYKI DEVVKDAAPS SLADMKKFAD AASVSIKSVY PESSNFLINQ TNPLVKSLQS
601: AGLPVYVYLL RNEFFSQPYD FFSDATSQIN ALVHKGGEGG GVDGLITDFP GTAHRYKLNS CRNMGDKTPY YMLPPQRGGL VGVIQDKAAL PPAMAPEPVL
701: TVSDVAEPPL PPVSNTTPPA PSHAAADVSV SIPITAAVLV LCASLLI

Best Arabidopsis Sequence Match ( AT1G66970.1 )
(BLAST)

001: MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL

Arabidopsis Description

SVL2SHV3-like 2 [Source:UniProtKB/TrEMBL;Acc:F4HQ30]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.