Factsheet for TraesCS6B01G202700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58170.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT5G58170.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT5G58170.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	97.73	97.73
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	97.6	97.6
Os02t0187400-01	Rice	plasma membrane	63.28	67.43
Zm00001d015609_P002	Maize	plasma membrane	65.02	63.99
KXG29647	Sorghum	extracellular, plasma membrane	63.02	62.68
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	59.28	58.34
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	43.26	56.94
GSMUA_Achr4P09430_001	Banana	extracellular	51.8	56.4
VIT_11s0206g00140.t01	Wine grape	plasma membrane	52.6	52.53
AT5G58050.1	Thale cress	extracellular, plasma membrane	48.73	48.47
Bra020395.1-P	Field mustard	plasma membrane	48.33	48.46
Bra020384.1-P	Field mustard	extracellular, plasma membrane	48.6	48.15
AT5G58170.1	Thale cress	extracellular, plasma membrane	48.2	48.13
KRH20083	Soybean	plasma membrane	48.87	47.91
KRH03081	Soybean	extracellular, plasma membrane	48.33	47.38
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	47.53	47.15
Bra006785.1-P	Field mustard	extracellular, plasma membrane	48.6	46.97
CDY12601	Canola	extracellular	7.88	43.38
Solyc02g014490.2.1	Tomato	unclear	39.79	41.27
TraesCS6B01G226700.2	Wheat	golgi	41.12	41.23
TraesCS2B01G352000.1	Wheat	extracellular, plasma membrane, vacuole	40.85	41.13
PGSC0003DMT400008464	Potato	cytosol	40.32	40.92
PGSC0003DMT400008461	Potato	cytosol	41.39	40.31
Solyc02g014530.2.1	Tomato	unclear	41.79	39.37
TraesCS7B01G147500.1	Wheat	unclear	38.85	37.69
TraesCS3B01G333600.1	Wheat	extracellular, golgi	12.42	23.79
TraesCS2B01G202800.1	Wheat	extracellular, golgi	11.21	22.83
TraesCS1B01G133300.1	Wheat	extracellular	11.35	22.25
TraesCS1B01G133400.2	Wheat	extracellular	10.81	20.98

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	SUPFAM:SSF51695
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS6B01G202700	EnsemblPlants:TraesCS6B01G202700.1	TIGR:cd08603	TIGR:cd08604	SEG:seg

Description

No Description!

Coordinates

chr6B:+:248351482..248357147

Molecular Weight (calculated)

80365.1 Da

IEP (calculated)

4.727

GRAVY (calculated)

0.135

Length

749 amino acids

Sequence
(BLAST)

001: MGGRYPHMLL ILILLHGANA AIDAPVQKWQ TLDGRPPLVI ARGGFSGLFP ESSRFAYEFA MTASLPGVVL ECDLQLSSDG VGFCRSGLTL DKSTLIAEVY
101: PKKDKTYKLG LEDIHGWFAV DFTSDELINN VTVIQTIFSR PSTFDAMMGM YTLDDMAGLH PQQIWVNVEF DGFYRDHNLD IEDYILKLPK DYPIAYISSP
201: DISFLKSIGG KLKGRAKLIL RCLAENVTET SVKKSYGEIL KDLKSVKAFA SGIMVPRNYV WPVNNNLYLL PPTSLVKDAH ALGLEVHVGS FANDILTSYN
301: YSYDPAAEYL QFINNPDFTV DGLMTDFPPT ASGAVACLAH NEANALASNG ERPIIITHNG ASGVYAGCTD LAYQQAVKDG ADIIDCSVRM SKDGVAFCLG
401: SADLIASTTA ATTFMTKVVT ISEIQNKSGI FSFDLSWSEI QTLKPELTGP FAQAGLKRNP AAKNAGKFFT LPEFLDFAKT SNVSGILIEI EDAPYLATRG
501: LGLVDAVSGA LVNASYDKES KQQVFIESDD SSVLSAFKKF PAFKRVLTVG TIISDASKPS VDEIKEFADA VMVTRGSLVK VNGFFLTGFT NLVENLHAAN
601: LSVHVGPLKN EFTNFGFDYF ADPMVEIATY SAALVVDAIV TEFPATATTY FRSPCSDPTK NLTYTIMAAA PGALVSMVPP GALPPALPPA PLLEPADVLD
701: PPLPPVSVSS PPEAAPKVAD SSSSPPSSSA GSCFLVAAGI AAFLYSGCH

Best Arabidopsis Sequence Match ( AT5G58170.1 )
(BLAST)

001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV

Arabidopsis Description

GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.