Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58170.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT5G58170.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29647 | Sorghum | extracellular, plasma membrane | 88.04 | 88.98 |
| Os02t0187400-01 | Rice | plasma membrane | 63.07 | 68.28 |
| TraesCS6A01G174100.1 | Wheat | extracellular, plasma membrane, vacuole | 64.13 | 65.15 |
| TraesCS6B01G202700.1 | Wheat | extracellular, plasma membrane | 63.99 | 65.02 |
| TraesCS6D01G163200.1 | Wheat | extracellular, plasma membrane | 63.6 | 64.62 |
| TraesCS1D01G357000.1 | Wheat | extracellular, plasma membrane | 60.45 | 60.45 |
| TraesCS1B01G368600.1 | Wheat | extracellular, plasma membrane | 60.45 | 60.45 |
| TraesCS1A01G353200.1 | Wheat | extracellular, plasma membrane | 60.45 | 60.45 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, peroxisome | 43.63 | 58.35 |
| GSMUA_Achr4P09430_001 | Banana | extracellular | 51.64 | 57.12 |
| HORVU1Hr1G080970.22 | Barley | extracellular, plasma membrane | 59.66 | 55.91 |
| VIT_11s0206g00140.t01 | Wine grape | plasma membrane | 52.96 | 53.73 |
| Bra020395.1-P | Field mustard | plasma membrane | 49.41 | 50.33 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 49.28 | 50.0 |
| KRH20083 | Soybean | plasma membrane | 50.2 | 50.0 |
| Bra020384.1-P | Field mustard | extracellular, plasma membrane | 49.41 | 49.74 |
| Bra002676.1-P | Field mustard | extracellular, golgi, plasma membrane | 49.28 | 49.67 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 49.01 | 49.54 |
| KRH03081 | Soybean | extracellular, plasma membrane | 49.54 | 49.35 |
| Bra006785.1-P | Field mustard | extracellular, plasma membrane | 49.01 | 48.13 |
| Zm00001d050917_P002 | Maize | plasma membrane | 42.84 | 43.29 |
| Zm00001d017036_P002 | Maize | plasma membrane | 41.92 | 41.32 |
| Solyc02g014490.2.1 | Tomato | unclear | 38.63 | 40.72 |
| PGSC0003DMT400008464 | Potato | cytosol | 39.42 | 40.65 |
| PGSC0003DMT400008461 | Potato | cytosol | 40.87 | 40.44 |
| Solyc02g014530.2.1 | Tomato | unclear | 41.26 | 39.5 |
| CDY12601 | Canola | extracellular | 6.96 | 38.97 |
| Zm00001d052875_P001 | Maize | mitochondrion | 38.5 | 37.76 |
| Zm00001d022153_P006 | Maize | extracellular, mitochondrion | 38.24 | 37.45 |
| Zm00001d025670_P001 | Maize | mitochondrion | 7.36 | 36.6 |
| Zm00001d031412_P001 | Maize | extracellular | 35.09 | 35.84 |
| Zm00001d012677_P012 | Maize | golgi | 11.83 | 23.02 |
| Zm00001d022067_P001 | Maize | extracellular | 11.17 | 22.85 |
| Zm00001d033187_P001 | Maize | plastid | 11.17 | 20.43 |
Protein Annotations
| EntrezGene:103626746 | Gene3D:3.20.20.190 | MapMan:35.1 | UniProt:A0A1D6H2W1 | ProteinID:AQK69190.1 | ProteinID:AQK69200.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | InterPro:GP_PDE_dom | InterPro:IPR017946 | InterPro:IPR030395 | PFAM:PF03009 | InterPro:PLC-like_Pdiesterase_TIM-brl |
| PFscan:PS51704 | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF3 | SUPFAM:SSF51695 | SignalP:SignalP-noTM | UniParc:UPI00084524F9 |
| EnsemblPlantsGene:Zm00001d015609 | EnsemblPlants:Zm00001d015609_P002 | EnsemblPlants:Zm00001d015609_T002 | SEG:seg | : | : |
Description
Glycerophosphodiester phosphodiesterase GDPDL3
Coordinates
chr5:-:100949055..100952879
Molecular Weight (calculated)
81855.5 Da
IEP (calculated)
5.381
GRAVY (calculated)
0.035
Length
761 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGAPPDQMG ASYPHMFLIL LLLRGANAAL KSPAGPKWQT LSGGPPLVIA RGGFSGVFPD SSQFAYQFAL TASLPDVVLL CDLQFSSDHI GFCKTGLTLD
101: NSTTVSERFP KMERTYKLLG EDVHGWFSLD FTAEQLVQNI TLIQNIFSRP STFDDSLGMY TLDDVVELHP PQIWLNVQYN SFFLEHKLSS EDYILELPKD
201: SLSYISSPEV EFLKSLAGKL KKAKTKLIFR FLNENVEEPS TKKTYGELLK DLKSIKAFAA GILVPKTYIW PLKKDQYLAP STSLVKDAHA LGLEVYASGF
301: ANDIVLSYNY SYDPSEEYLQ FMDNPDFSVD GVLTDFPSTA SGAVACLAHS KGNPLPPPGK DTRPLIITHN GASGVFPGST DLAYQQAIKD AADIIDCTVQ
401: MSKDGTAFCK HSADISSSTT ASVAFASKAS TVHEIQNKSG IFSFDLSWSE IATLKPSIIS PFAQAGMLRN PAAKNAGKLM TLPEFLDLAK ASNITGILIE
501: IEHASYLAKR GIGVVEAVSS ALTKAGYDKE TKQQVFIQSD DSSVLAAFKK FARFRRVLNI EAKISGASKP SVDDIKKYAD TVRVNRNSVA QINGYFLTHF
601: TDTVSSLQDA NITVFVGVLK NEFMNLGFDY FADPTVEIAT YTLAVLADGL VTDNPATAAS YFRSPCSDMK LNLSYTILPA QPGALVNLAS PGALAPAGAP
701: APLLQPADVV DPPLPPVKAV IAADAPAPGA ADNTSSAFSS SAGNGLLWAG IAALLSLTFL H
101: NSTTVSERFP KMERTYKLLG EDVHGWFSLD FTAEQLVQNI TLIQNIFSRP STFDDSLGMY TLDDVVELHP PQIWLNVQYN SFFLEHKLSS EDYILELPKD
201: SLSYISSPEV EFLKSLAGKL KKAKTKLIFR FLNENVEEPS TKKTYGELLK DLKSIKAFAA GILVPKTYIW PLKKDQYLAP STSLVKDAHA LGLEVYASGF
301: ANDIVLSYNY SYDPSEEYLQ FMDNPDFSVD GVLTDFPSTA SGAVACLAHS KGNPLPPPGK DTRPLIITHN GASGVFPGST DLAYQQAIKD AADIIDCTVQ
401: MSKDGTAFCK HSADISSSTT ASVAFASKAS TVHEIQNKSG IFSFDLSWSE IATLKPSIIS PFAQAGMLRN PAAKNAGKLM TLPEFLDLAK ASNITGILIE
501: IEHASYLAKR GIGVVEAVSS ALTKAGYDKE TKQQVFIQSD DSSVLAAFKK FARFRRVLNI EAKISGASKP SVDDIKKYAD TVRVNRNSVA QINGYFLTHF
601: TDTVSSLQDA NITVFVGVLK NEFMNLGFDY FADPTVEIAT YTLAVLADGL VTDNPATAAS YFRSPCSDMK LNLSYTILPA QPGALVNLAS PGALAPAGAP
701: APLLQPADVV DPPLPPVKAV IAADAPAPGA ADNTSSAFSS SAGNGLLWAG IAALLSLTFL H
001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
Arabidopsis Description
GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.