Factsheet for TraesCS1A01G353200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58170.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT5G58170.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT5G58170.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	96.85	96.85
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	95.93	95.93
HORVU1Hr1G080970.22	Barley	extracellular, plasma membrane	87.65	82.14
Os02t0187400-01	Rice	plasma membrane	56.9	61.59
Zm00001d015609_P002	Maize	plasma membrane	60.45	60.45
KXG29647	Sorghum	extracellular, plasma membrane	59.79	60.42
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	57.69	58.61
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	40.6	54.31
GSMUA_Achr4P09430_001	Banana	extracellular	48.23	53.34
VIT_11s0206g00140.t01	Wine grape	plasma membrane	48.62	49.33
Bra020395.1-P	Field mustard	plasma membrane	45.99	46.85
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	46.39	46.76
AT5G58170.1	Thale cress	extracellular, plasma membrane	45.99	46.67
AT5G58050.1	Thale cress	extracellular, plasma membrane	45.47	45.95
Bra006785.1-P	Field mustard	extracellular, plasma membrane	46.52	45.68
Bra020384.1-P	Field mustard	extracellular, plasma membrane	45.2	45.5
KRH20083	Soybean	plasma membrane	44.94	44.76
KRH03081	Soybean	extracellular, plasma membrane	44.42	44.24
TraesCS2A01G330200.1	Wheat	extracellular, plasma membrane, vacuole	40.47	41.4
TraesCS6A01G200600.1	Wheat	golgi	40.34	41.04
PGSC0003DMT400008461	Potato	cytosol	41.26	40.83
CDY12601	Canola	extracellular	7.23	40.44
Solyc02g014530.2.1	Tomato	unclear	41.52	39.75
PGSC0003DMT400008464	Potato	cytosol	38.5	39.7
Solyc02g014490.2.1	Tomato	unclear	37.58	39.61
TraesCS7A01G243900.3	Wheat	golgi	37.32	36.93
TraesCS3A01G302700.1	Wheat	extracellular, golgi	12.48	24.3
TraesCS2A01G176400.1	Wheat	extracellular	11.04	22.83
TraesCS1A01G113200.1	Wheat	extracellular	10.64	21.2
TraesCS1A01G113300.1	Wheat	extracellular	10.38	20.68

Protein Annotations

EnsemblPlants:TraesCS1A01G353200.1	EnsemblPlantsGene:TraesCS1A01G353200	Gene3D:3.20.20.190	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946
InterPro:IPR030395	InterPro:PLC-like_Pdiesterase_TIM-brl	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	PFAM:PF03009	PFscan:PS51704
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51695	TIGR:cd08604	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:536935653..536939064

Molecular Weight (calculated)

83137.2 Da

IEP (calculated)

4.795

GRAVY (calculated)

-0.009

Length

761 amino acids

Sequence
(BLAST)

001: MGATYPLVFL ILLLLHGTKA ASDPPVPGWL TLSGRRPLVI ARGGLSGVVP ESSQLAYSMA MGSSLCEVVL FCDLQFSSDG VGFCHGSLRL DNSSNIAEKF
101: ADRGSTYQVN GRDVQGWFSL DFKSEELHSV LLVQNVLSRS NTFDRTQELL SLDNVVQSVL AQKGELHVIW VNIEYNSFFL EHGLSGEDYI LGLPKEFPVT
201: RVSSPEFAFL KSLSGKVRSD IKLIFRFLRE DLVEPTTKRT YGELLKDLKS IKAFASGILV PKQFIWPQNK DMYLEPSTSL VKDAHALGLE VYASGFANDD
301: PCMSYNYSYD PSAEILQFID NSDFSVDGVL TDNPPTASGA IVCMAHTKGN AFVFPIAKDG APPGVEANVR PLIITHNGAS GVFSDSTDLA YQQAVKDGAD
401: IIDCWVRMSK DGVAFCLGST DLNSSTTAAT TFLEKMTTVN EIQNKSGIFS FDLLWSEIQT LKPNLVGPFA DARLERNPAA KNAGKFMTLA EFLDFAKASN
501: ITGILIGIEH ATYLIARSLD VVDAVSKALV KSGYDKETCK QRVLIQSEDA PVLAAFKTFP KFQRVLTIEF DISDASKPSV DEILEFANAV KLRRSSAARV
601: NGFFLEGFTN SLVDRLHAGN LHVYVGVLKN EFMNLAFDYW ADPLVEIATD TLSVGADGIV TEFPATAAAY FRSPCANYER KDLPYMIDPA TPGGLLQLAA
701: TGSVPPAPPP APVLEPQDIL QQQLPVCPND PMFRTFRCRL GPKETPTGKP EYNINMASLD D

Best Arabidopsis Sequence Match ( AT1G66970.1 )
(BLAST)

001: MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL

Arabidopsis Description

SVL2SHV3-like 2 [Source:UniProtKB/TrEMBL;Acc:F4HQ30]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.