Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58170.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT5G58170.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT5G58170.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G353200.1 | Wheat | extracellular, plasma membrane | 96.85 | 96.85 |
| TraesCS1B01G368600.1 | Wheat | extracellular, plasma membrane | 96.06 | 96.06 |
| HORVU1Hr1G080970.22 | Barley | extracellular, plasma membrane | 88.04 | 82.51 |
| Os02t0187400-01 | Rice | plasma membrane | 57.03 | 61.74 |
| Zm00001d015609_P002 | Maize | plasma membrane | 60.45 | 60.45 |
| KXG29647 | Sorghum | extracellular, plasma membrane | 59.4 | 60.03 |
| TraesCS6D01G163200.1 | Wheat | extracellular, plasma membrane | 57.29 | 58.21 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, peroxisome | 40.47 | 54.13 |
| GSMUA_Achr4P09430_001 | Banana | extracellular | 48.09 | 53.2 |
| VIT_11s0206g00140.t01 | Wine grape | plasma membrane | 48.23 | 48.93 |
| AT5G58170.1 | Thale cress | extracellular, plasma membrane | 46.12 | 46.8 |
| Bra020395.1-P | Field mustard | plasma membrane | 45.86 | 46.72 |
| Bra002676.1-P | Field mustard | extracellular, golgi, plasma membrane | 46.25 | 46.62 |
| AT5G58050.1 | Thale cress | extracellular, plasma membrane | 45.47 | 45.95 |
| Bra006785.1-P | Field mustard | extracellular, plasma membrane | 46.39 | 45.55 |
| Bra020384.1-P | Field mustard | extracellular, plasma membrane | 45.07 | 45.37 |
| KRH20083 | Soybean | plasma membrane | 44.81 | 44.63 |
| KRH03081 | Soybean | extracellular, plasma membrane | 44.15 | 43.98 |
| TraesCS2D01G332500.1 | Wheat | golgi | 40.47 | 41.4 |
| TraesCS6D01G189300.1 | Wheat | unclear | 39.95 | 40.7 |
| CDY12601 | Canola | extracellular | 7.23 | 40.44 |
| PGSC0003DMT400008461 | Potato | cytosol | 40.74 | 40.31 |
| PGSC0003DMT400008464 | Potato | cytosol | 38.24 | 39.43 |
| Solyc02g014530.2.1 | Tomato | unclear | 41.0 | 39.25 |
| Solyc02g014490.2.1 | Tomato | unclear | 37.19 | 39.2 |
| TraesCS7D01G242500.1 | Wheat | golgi, plastid, unclear | 37.84 | 35.56 |
| TraesCS3D01G299100.1 | Wheat | extracellular, golgi | 12.48 | 24.3 |
| TraesCS2D01G183800.1 | Wheat | extracellular | 11.04 | 22.83 |
| TraesCS1D01G114600.1 | Wheat | extracellular, vacuole | 10.78 | 21.47 |
| TraesCS1D01G114700.2 | Wheat | extracellular | 10.64 | 21.2 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G357000.1 | EnsemblPlantsGene:TraesCS1D01G357000 | Gene3D:3.20.20.190 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:GP_PDE_dom | InterPro:IPR017946 |
| InterPro:IPR030395 | InterPro:PLC-like_Pdiesterase_TIM-brl | PANTHER:PTHR43620 | PANTHER:PTHR43620:SF3 | PFAM:PF03009 | PFscan:PS51704 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF51695 | TIGR:cd08604 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1D:-:441075875..441079303
Molecular Weight (calculated)
83310.4 Da
IEP (calculated)
4.883
GRAVY (calculated)
-0.045
Length
761 amino acids
Sequence
(BLAST)
(BLAST)
001: MGARYPLVFL ILLILHGTKA APDPPVPGWL TLSGHRPLVI ARGGLSGVVP ESSQLAYSMA MGGSLCEVVL FCDLQFSSDG VGFCHGSLRL DNSSNIAEMF
101: ADRGSTYQVN GRDVQGWFSL DFKSEELHRV LLLQNVLSRS NTFDRTQELL SLDNVVQSVL AQKGELHVIW VNIEYNSFFL EHGLSGEDYI LGLPKEFPVT
201: RVSSPEFAFL KSLSGKVRSD IKLIFRFLRE DLVEPTTKRT YGELLKDLKA IKAFASGILV PKQFIWPQNK DMYLEPSTSL VKDAHALGLE VYASGFANDD
301: PCMSYNYSYD PSAEILQYID NSDFSVDGVL TDNPPTASGA IVCMAHTKGN AFVFPIAKAG APPGGGENTR PLIITHNGAS GVFSDSTDLA YQQAVKDGAD
401: IIDCWVRMSK DGVAFCLGST DLNSSTTAAT TFLEKMTTVN EIQNKSGIFS FDLLWSEIQT LKPNLVGPFA DARLERNPAA KNAGKFMTLA EFLDFAKASN
501: ITGILIGIEH ATYLIARSLD VVDAVSKALV KSGYDKETCK QRVLIQSEDA PVLAAFKTFP KFQRVLTIEF DISDASKPSV DEILEFANAV KLRRSSAARV
601: NGFFLEGFTN SLVDRLHAGN LHVYVGVLKN EFMNLAFDYW ADPLVEIATD TLSVGADGIV TEFPATAASY FRSPCSNYER KDLPFTINPA EPGGLLQLAD
701: RNSVPPAPPP APVLEPQDIL QQQLPVCPND PMFRTFRCRL GPKETPTGKP EYNINMASLD D
101: ADRGSTYQVN GRDVQGWFSL DFKSEELHRV LLLQNVLSRS NTFDRTQELL SLDNVVQSVL AQKGELHVIW VNIEYNSFFL EHGLSGEDYI LGLPKEFPVT
201: RVSSPEFAFL KSLSGKVRSD IKLIFRFLRE DLVEPTTKRT YGELLKDLKA IKAFASGILV PKQFIWPQNK DMYLEPSTSL VKDAHALGLE VYASGFANDD
301: PCMSYNYSYD PSAEILQYID NSDFSVDGVL TDNPPTASGA IVCMAHTKGN AFVFPIAKAG APPGGGENTR PLIITHNGAS GVFSDSTDLA YQQAVKDGAD
401: IIDCWVRMSK DGVAFCLGST DLNSSTTAAT TFLEKMTTVN EIQNKSGIFS FDLLWSEIQT LKPNLVGPFA DARLERNPAA KNAGKFMTLA EFLDFAKASN
501: ITGILIGIEH ATYLIARSLD VVDAVSKALV KSGYDKETCK QRVLIQSEDA PVLAAFKTFP KFQRVLTIEF DISDASKPSV DEILEFANAV KLRRSSAARV
601: NGFFLEGFTN SLVDRLHAGN LHVYVGVLKN EFMNLAFDYW ADPLVEIATD TLSVGADGIV TEFPATAASY FRSPCSNYER KDLPFTINPA EPGGLLQLAD
701: RNSVPPAPPP APVLEPQDIL QQQLPVCPND PMFRTFRCRL GPKETPTGKP EYNINMASLD D
001: MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL
101: LNLANASTID RVYPNREKSY SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL NVQHDAFYEQ QNLSMSSFLL
201: SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ
301: VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS
401: VQMSSDGVPF CLRSIDLRNS IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG KLISLSQFLD LAKTYTSLSG
501: VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD
601: SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP
701: PAQAPNQDFI EADVTEPPLS PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL
Arabidopsis Description
SVL2SHV3-like 2 [Source:UniProtKB/TrEMBL;Acc:F4HQ30]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.