Factsheet for GSMUA_AchrUn_randomP01270_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
golgi 1
cytosol 1
plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58170.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09430_001	Banana	extracellular	74.87	61.92
VIT_11s0206g00140.t01	Wine grape	plasma membrane	63.8	48.4
CDY11832	Canola	cytosol, peroxisome, plastid	12.65	47.06
CDY02788	Canola	plasma membrane	58.0	44.3
Bra020395.1-P	Field mustard	plasma membrane	57.65	43.91
CDY32730	Canola	plasma membrane	57.47	43.89
TraesCS6A01G174100.1	Wheat	extracellular, plasma membrane, vacuole	57.65	43.79
Zm00001d015609_P002	Maize	plasma membrane	58.35	43.63
TraesCS6B01G202700.1	Wheat	extracellular, plasma membrane	56.94	43.26
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	57.29	43.18
KXG29647	Sorghum	extracellular, plasma membrane	57.12	43.16
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	56.77	43.12
CDY43885	Canola	extracellular, golgi, plasma membrane	56.77	43.01
AT5G58050.1	Thale cress	extracellular, plasma membrane	56.59	42.76
CDY32720	Canola	extracellular, plastid, vacuole	56.41	42.69
CDY02800	Canola	extracellular, plasma membrane, plastid	56.06	42.65
Bra020384.1-P	Field mustard	extracellular, plasma membrane	56.41	42.46
EER90089	Sorghum	extracellular, plasma membrane	56.41	42.18
AT5G58170.1	Thale cress	extracellular, plasma membrane	55.36	42.0
Bra006785.1-P	Field mustard	extracellular, plasma membrane	56.94	41.81
CDX88656	Canola	plasma membrane	56.94	41.81
Os02t0187400-01	Rice	plasma membrane	51.49	41.68
TraesCS1B01G368600.1	Wheat	extracellular, plasma membrane	54.48	40.74
TraesCS1A01G353200.1	Wheat	extracellular, plasma membrane	54.31	40.6
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	54.13	40.47
KRH20083	Soybean	plasma membrane	52.72	39.27
CDY11831	Canola	extracellular, vacuole	38.66	38.87
KRH03081	Soybean	extracellular, plasma membrane	51.32	38.22
HORVU1Hr1G080970.22	Barley	extracellular, plasma membrane	53.43	37.44
PGSC0003DMT400008461	Potato	cytosol	46.4	34.33
PGSC0003DMT400008464	Potato	cytosol	43.59	33.6
Solyc02g014490.2.1	Tomato	unclear	42.35	33.38
GSMUA_Achr9P12610_001	Banana	endoplasmic reticulum, plasma membrane, plastid	46.05	33.33
GSMUA_Achr8P25690_001	Banana	plasma membrane	44.29	33.16
GSMUA_Achr1P16520_001	Banana	extracellular, plasma membrane	43.76	33.16
Solyc02g014530.2.1	Tomato	unclear	46.22	33.08
GSMUA_Achr3P03920_001	Banana	cytosol	41.3	29.75
GSMUA_Achr6P34970_001	Banana	extracellular, plasma membrane	13.18	19.28
CDX71386	Canola	extracellular	2.99	8.99
GSMUA_AchrUn_...	Banana	extracellular	1.58	5.49

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	EnsemblPlantsGene:GSMUA_AchrUn_randomG01270_001	EnsemblPlants:GSMUA_AchrUn_randomP01270_001
EnsemblPlants:GSMUA_AchrUn_randomT01270_001	InterPro:IPR017946	InterPro:IPR030395	UniProt:M0U5D9	PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	SUPFAM:SSF51695	UniParc:UPI0002954714	SEG:seg

Description

Putative Probable glycerophosphoryl diester phosphodiesterase 2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01270_001]

Coordinates

chrchrUn_random:-:4228771..4233017

Molecular Weight (calculated)

61576.4 Da

IEP (calculated)

4.698

GRAVY (calculated)

0.050

Length

569 amino acids

Sequence
(BLAST)

001: MVEDVTGLHP YQFWINVQYS IFFKEHKQDV ATYITTASEQ MVIDYISSPE IAFLKSLSGK LRSGKTKLIF RFLEVDDVEP SAKQTYKALL TDLSTIKSFA
101: SGILVPKSYI WPVNKDQYLE PHTSLVTDAH NLGLEVYASN FANDMPASYN YSFDPTAEYL QFIDNSNFSV DGVLTDFPST ASEAVACLAH NKNNTLPTEG
201: RPLIITHNGA SGVFAGCTDL AYQQAAEDGA DILDCSVQMS KDGVVFCLDS ADLMGHTTAI KTFMPRATVV PEIQKENGIF SFDLTWSEIQ SLKPELTTPL
301: SQSGLARNPA AKNQGKFMTL TDFLEFAKKS TVAGVLINIE NAGYLVSKKG LGIVEAVSTA LTNASYDKLP KKQVLIQSDD TAVLSAFKKN SGYKRVLYVK
401: ETISDAPKPT VDEIKHSADA VNLPRSSIFL AIAFDYFSDP MVELATYVAG VQVDGVVTEF PATLAAYLRS PCSNMNAKLP YSILPVEPGS LLSLVSPEAL
501: PPAEAPAPVL AVADIQDPPL PPVADLSDKA SVTAAPQTSP PRSGQSAIAV NAALSLLIVM LSFVQLRFL

Best Arabidopsis Sequence Match ( AT5G58050.1 )
(BLAST)

001: MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA

Arabidopsis Description

GDPDL6Glycerophosphodiester phosphodiesterase GDPDL6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGT9]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.