Factsheet for TraesCS6A01G174100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58170.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT5G58170.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT5G58170.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	98.0	98.0
TraesCS6B01G202700.1	Wheat	extracellular, plasma membrane	97.6	97.6
Os02t0187400-01	Rice	plasma membrane	62.75	66.86
Zm00001d015609_P002	Maize	plasma membrane	65.15	64.13
KXG29647	Sorghum	extracellular, plasma membrane	63.15	62.82
TraesCS1A01G353200.1	Wheat	extracellular, plasma membrane	58.61	57.69
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	43.79	57.65
GSMUA_Achr4P09430_001	Banana	extracellular	51.94	56.54
VIT_11s0206g00140.t01	Wine grape	plasma membrane	52.34	52.27
Bra020395.1-P	Field mustard	plasma membrane	48.87	49.0
AT5G58050.1	Thale cress	extracellular, plasma membrane	49.13	48.87
Bra020384.1-P	Field mustard	extracellular, plasma membrane	49.0	48.55
AT5G58170.1	Thale cress	extracellular, plasma membrane	48.6	48.53
KRH20083	Soybean	plasma membrane	49.13	48.17
Bra002676.1-P	Field mustard	extracellular, golgi, plasma membrane	48.06	47.68
KRH03081	Soybean	extracellular, plasma membrane	48.6	47.64
Bra006785.1-P	Field mustard	extracellular, plasma membrane	49.13	47.48
CDY12601	Canola	extracellular	7.88	43.38
Solyc02g014490.2.1	Tomato	unclear	40.19	41.69
TraesCS2A01G330200.1	Wheat	extracellular, plasma membrane, vacuole	41.26	41.53
PGSC0003DMT400008464	Potato	cytosol	40.85	41.46
PGSC0003DMT400008461	Potato	cytosol	42.06	40.96
TraesCS6A01G200600.1	Wheat	golgi	40.85	40.91
Solyc02g014530.2.1	Tomato	unclear	42.19	39.75
TraesCS7A01G243900.3	Wheat	golgi	39.92	38.88
TraesCS3A01G302700.1	Wheat	extracellular, golgi	12.55	24.04
TraesCS2A01G176400.1	Wheat	extracellular	11.21	22.83
TraesCS1A01G113200.1	Wheat	extracellular	10.95	21.47
TraesCS1A01G113300.1	Wheat	extracellular	10.81	21.2

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	SUPFAM:SSF51695
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS6A01G174100	EnsemblPlants:TraesCS6A01G174100.1	TIGR:cd08603	TIGR:cd08604	SEG:seg

Description

No Description!

Coordinates

chr6A:+:187736288..187741913

Molecular Weight (calculated)

80447.1 Da

IEP (calculated)

4.732

GRAVY (calculated)

0.129

Length

749 amino acids

Sequence
(BLAST)

001: MGGRYPHMLL ILILLHGANA AIDAPVEKWQ TLDGRPPLVI ARGGFSGLFP ESSKFAYEFA MTASLPGVVL ECDLQLSSDG VGFCRSGLTL DKSTLIAEMY
101: PKKDKTYKLG LEDIHGWFAV DFTSDELINN VTVIQTIFSR PSTFDAMMGM YTLDDMAGLH PQQIWVNVEF DGFYRDHNLD IEDYLLKLPK DYPIAYISSP
201: DISFLKSIGG KLKGRAKLIF RCLADNVTET SVKKSYGEIL KDLKSIKAFA SGIMVPRNYV WPVNNNLYLL PPTSLVKDAH ALGLEVHVGS FANDILTSYN
301: YSYDPAAEYL QFINNPDFTV DGLMTDFPPT ASGAVACLAH NEANALASNG ERPLIITHNG ASGVYAGCTD LAYQQAVKDG ADIIDCSVRM SKDGVAFCLG
401: SADLIASTTA ATTFMTKVVT ISEIQSKSGI FSFDLSWSEI QSLKPELTGP FAQAGLKRNP AAKNAGKFFT LPEFLDFAKS SNVSGILIEI EDAPYLATRG
501: LGLVDAVSGA LVNASYDKES KQQVFIESDD SSVLSAFKKF PSFKRVLTVG TIISDASKPS VDEIKEFADV VMVTRGSLVK VNGFFLTGFT NLVENLHAAN
601: LTVHVGPLKN EFTNFGFDYF ADPMVEIATY SAALVVDGIV TEFPATATTY FRSPCSDPTK NLTYTIMAAA PGALVSMVPP GALPPALPPA PLLEPADVLD
701: PPLPPVSVSG PPEAAPKVAD SSSSPHSSSA GSCFLVAAGI AAFLYSGFH

Best Arabidopsis Sequence Match ( AT5G58170.1 )
(BLAST)

001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV

Arabidopsis Description

GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.