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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • cytosol 1
  • plastid 2
  • extracellular 2
  • plasma membrane 2
  • mitochondrion 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:cytosol
iPSORT:plastid
MultiLoc:extracellular
Plant-mPloc:plasma membrane
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58170.1 Solyc07g065490.2.1 AT4G26630.1 25387881
AT5G58170.1 Solyc10g006000.2.1 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400008464 Potato cytosol 91.97 89.97
Solyc02g014530.2.1 Tomato unclear 81.58 74.09
VIT_11s0206g00140.t01 Wine grape plasma membrane 46.95 45.2
CDY02788 Canola plasma membrane 45.57 44.16
Bra020395.1-P Field mustard plasma membrane 45.43 43.91
CDY32730 Canola plasma membrane 45.29 43.89
CDY32720 Canola extracellular, plastid, vacuole 45.71 43.88
CDY02800 Canola extracellular, plasma membrane, plastid 45.43 43.85
AT5G58050.1 Thale cress extracellular, plasma membrane 45.71 43.82
Bra020384.1-P Field mustard extracellular, plasma membrane 45.84 43.78
Bra002676.1-P Field mustard extracellular, golgi, plasma membrane 45.71 43.71
AT5G58170.1 Thale cress extracellular, plasma membrane 45.29 43.6
CDY43885 Canola extracellular, golgi, plasma membrane 45.29 43.54
KRH20083 Soybean plasma membrane 45.15 42.67
CDY11831 Canola extracellular, vacuole 33.24 42.4
GSMUA_AchrUn_... Banana cytosol, endoplasmic reticulum, peroxisome 33.38 42.35
GSMUA_Achr4P09430_001 Banana extracellular 40.3 42.3
CDX88656 Canola plasma membrane 45.01 41.94
KRH03081 Soybean extracellular, plasma membrane 44.32 41.88
Bra006785.1-P Field mustard extracellular, plasma membrane 44.88 41.81
Os02t0187400-01 Rice plasma membrane 40.03 41.11
TraesCS6A01G174100.1 Wheat extracellular, plasma membrane, vacuole 41.69 40.19
TraesCS6D01G163200.1 Wheat extracellular, plasma membrane 41.41 39.92
TraesCS6B01G202700.1 Wheat extracellular, plasma membrane 41.27 39.79
KXG29647 Sorghum extracellular, plasma membrane 40.58 38.91
Zm00001d015609_P002 Maize plasma membrane 40.72 38.63
TraesCS1A01G353200.1 Wheat extracellular, plasma membrane 39.61 37.58
TraesCS1B01G368600.1 Wheat extracellular, plasma membrane 39.47 37.45
EER90089 Sorghum extracellular, plasma membrane 39.47 37.45
TraesCS1D01G357000.1 Wheat extracellular, plasma membrane 39.2 37.19
CDX71386 Canola extracellular 9.7 37.04
Solyc12g014570.1.1 Tomato nucleus 37.81 36.35
Solyc07g065120.2.1 Tomato extracellular 37.81 36.26
HORVU1Hr1G080970.22 Barley extracellular, plasma membrane 38.92 34.61
CDY11832 Canola cytosol, peroxisome, plastid 6.09 28.76
Solyc06g069470.2.1 Tomato extracellular 11.22 20.72
Protein Annotations
Gene3D:3.20.20.190MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0006629GO:GO:0008081
GO:GO:0008150GO:GO:0008152GO:GO:0016787InterPro:GP_PDE_domInterPro:IPR017946InterPro:IPR030395
UniProt:K4B4P8PFAM:PF03009InterPro:PLC-like_Pdiesterase_TIM-brlPFscan:PS51704PANTHER:PTHR43620PANTHER:PTHR43620:SF3
SUPFAM:SSF51695SignalP:SignalP-noTMEnsemblPlantsGene:Solyc02g014490.2EnsemblPlants:Solyc02g014490.2.1UniParc:UPI0002768432SEG:seg
Description
No Description!
Coordinates
chr2:+:16642344..16648847
Molecular Weight (calculated)
80556.2 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.166
Length
722 amino acids
Sequence
(BLAST)
001: MLLPSLPDLN IQDWKKMLRH VLLICLMIQC TIADAKHKKG TAVPLAKRKW LTLHGDEPVV VANGGFSGLY PSQTDIAFRN VFGKNGTVFL CDLHMSRDGH
101: GFCLSQLNIQ NTTTAADAFP DRRKTYIVNG KELQGWFALD FTSDEMLSKL VVTQSIFSRS DLFDFSSPYP TDLFLEENNN TQLWINAEYP AFYNQHNLSL
201: VDKIKQLLEV KKDISYISSS DIGFLKRMGP VVRGLKTKLM FKFPKFAAGI VVPREYIWPV NRGRHLKSST NLVAKAHKQG VQVFAYGFAN DNYLPYNYSY
301: DPQREYLQFV DNSKFAVDGV VTDFATSASI AIACLAGSRN ASRRVHTLII TANGASGDYP GSTDLAYQKA VDDGADIIDC SVQMTKDGVA FCLPSVDLIS
401: TTTASGPFMS RSTKVEALQS SMGIFSFDFT WEEIQSLKPQ MFSEFNGELA RDPARKNMGK FVTLSDFLEF AKAKAVSGVL INIENAAFLA TNKDLDIVGA
501: VTTALSNATL DKQSTQKVLI MSGESSVLDK FKDISTYQKV LHIKKKVEFV TNETALEIKK HADAVLLHKH SLYTQFRGEG FTLNLTNLIE CMHWANISVY
601: AGTVLNEFQD IYMDFNSDPY TLIHNLIYYG ADGIITQYPR TANAYTRNLC TGNKESYRIP EINPGEVITY ALDPKEVEEY TPPPPEYLET KDFVTPPLPP
701: VAAIAKKNDH GGSNSNSIFS LW
Best Arabidopsis Sequence Match ( AT5G58170.1 )
(BLAST)
001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
Arabidopsis Description
GDPDL7Glycerophosphodiester phosphodiesterase GDPDL7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN0]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.