CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60410	Canola	extracellular	25.93	36.03
CDY12601	Canola	extracellular	25.4	35.29
CDY11831	Canola	extracellular, vacuole	89.95	30.04
CDY32730	Canola	plasma membrane	97.88	24.83
CDY02788	Canola	plasma membrane	97.88	24.83
CDX86765	Canola	extracellular, mitochondrion, vacuole	20.63	23.49
CDX88656	Canola	plasma membrane	88.36	21.55
CDY43885	Canola	extracellular, golgi, plasma membrane	85.19	21.44
CDY02800	Canola	extracellular, plasma membrane, plastid	81.48	20.59
CDY32720	Canola	extracellular, plastid, vacuole	81.48	20.48
CDY71959	Canola	extracellular, plastid, vacuole	33.86	19.51
GSMUA_Achr4P09430_001	Banana	extracellular	50.26	13.81
VIT_11s0206g00140.t01	Wine grape	plasma membrane	53.44	13.47
KRH20083	Soybean	plasma membrane	46.56	11.52
KRH03081	Soybean	extracellular, plasma membrane	43.39	10.73
CDY61647	Canola	extracellular, plasma membrane	40.74	10.2
CDY13237	Canola	extracellular, plasma membrane, vacuole	40.21	10.01
CDX89312	Canola	extracellular, plasma membrane, vacuole	39.15	9.78
Solyc02g014490.2.1	Tomato	unclear	37.04	9.7
CDX94294	Canola	extracellular, plasma membrane, vacuole	38.62	9.64
CDX92806	Canola	extracellular, plasma membrane, vacuole	35.45	9.36
PGSC0003DMT400008464	Potato	cytosol	36.51	9.35
CDY46687	Canola	extracellular, plasma membrane, vacuole	35.45	9.34
PGSC0003DMT400008461	Potato	cytosol	37.57	9.23
Solyc02g014530.2.1	Tomato	unclear	38.1	9.06
CDY12605	Canola	extracellular, vacuole	32.8	8.66
CDY17323	Canola	plasma membrane	34.92	8.59
CDY36746	Canola	plasma membrane	33.86	8.36
CDY11996	Canola	plasma membrane	33.33	8.15
CDY19634	Canola	plasma membrane	31.22	8.13
CDY36036	Canola	plasma membrane	32.8	7.3
CDX86766	Canola	plasma membrane	21.16	6.32
CDY58867	Canola	plasma membrane	23.28	6.09
CDY60415	Canola	plasma membrane	37.04	5.9
CDY14478	Canola	plasma membrane	39.15	5.63
CDY45656	Canola	extracellular, golgi, plasma membrane	13.76	3.98
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, peroxisome	8.99	2.99
CDY72472	Canola	mitochondrion	5.82	2.93
CDY29432	Canola	cytosol, peroxisome	5.82	1.85
CDX69980	Canola	extracellular, golgi, vacuole	0.53	0.27
CDX68196	Canola	golgi	0.0	0.0
CDY42328	Canola	cytosol	0.0	0.0
CDX73068	Canola	extracellular	0.0	0.0
CDX82242	Canola	cytosol	0.0	0.0
CDX85814	Canola	extracellular	0.0	0.0
CDX85815	Canola	mitochondrion	0.0	0.0
CDX86807	Canola	cytosol	0.0	0.0
CDX96524	Canola	golgi, mitochondrion, peroxisome, plastid	0.0	0.0
CDX99041	Canola	extracellular	0.0	0.0
CDY11071	Canola	extracellular, golgi	0.0	0.0
CDY11832	Canola	cytosol, peroxisome, plastid	0.0	0.0
CDY12599	Canola	cytosol	0.0	0.0
CDX68195	Canola	peroxisome	0.0	0.0

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:A0A078C2Y4	EnsemblPlants:CDX71386	ProteinID:CDX71386	ProteinID:CDX71386.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:GP_PDE_dom	EnsemblPlantsGene:GSBRNA2T00148198001	InterPro:IPR017946	InterPro:IPR030395	InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF3	SUPFAM:SSF51695	SignalP:SignalP-noTM	UniParc:UPI0004EEDEB4
SEG:seg	:	:	:	:	:

Description

BnaC04g16210D

Coordinates

chrLK031793:+:351140..352347

Molecular Weight (calculated)

20695.1 Da

IEP (calculated)

8.044

GRAVY (calculated)

0.285

Length

189 amino acids

Sequence
(BLAST)

001: MLRFFIFFFL FIHSCVAAPK IPAAVPATKW LTLNGQEPAV VARGGFSGLF PESSASANDL AISTSSPGLT MLCNLQMTKD GVGLCLSDIR LDNATTISTL
101: FPKAQKTYKV YGQDLKGWFV LDYSADTIFS NVSLVQNIFS RPSIFDGQMP VSAVEDVLGI KPPKFWLSVQ YDSFYMEHKL SAAGLGFRV

Best Arabidopsis Sequence Match ( AT5G58050.1 )
(BLAST)

001: MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA

Arabidopsis Description

GDPDL6Glycerophosphodiester phosphodiesterase GDPDL6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGT9]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.