Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • cytosol 2
  • plastid 1
  • extracellular 3
  • plasma membrane 4
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, plastid, secretory
BaCelLo:cytosol
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:extracellular
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:golgi
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58170.1 Solyc07g065490.2.1 AT4G26630.1 25387881
AT5G58170.1 Solyc10g006000.2.1 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400008461 Potato cytosol 91.95 95.06
Solyc02g014490.2.1 Tomato unclear 74.09 81.58
VIT_11s0206g00140.t01 Wine grape plasma membrane 46.16 48.93
CDY32730 Canola plasma membrane 44.53 47.52
Bra020395.1-P Field mustard plasma membrane 44.53 47.39
CDY02788 Canola plasma membrane 44.4 47.38
AT5G58050.1 Thale cress extracellular, plasma membrane 44.78 47.28
CDY02800 Canola extracellular, plasma membrane, plastid 44.28 47.06
AT5G58170.1 Thale cress extracellular, plasma membrane 44.28 46.93
Bra002676.1-P Field mustard extracellular, golgi, plasma membrane 44.4 46.76
Bra020384.1-P Field mustard extracellular, plasma membrane 44.4 46.69
CDY32720 Canola extracellular, plastid, vacuole 44.15 46.68
CDY43885 Canola extracellular, golgi, plasma membrane 44.03 46.6
GSMUA_AchrUn_... Banana cytosol, endoplasmic reticulum, peroxisome 33.08 46.22
CDY11831 Canola extracellular, vacuole 32.83 46.11
KRH20083 Soybean plasma membrane 43.52 45.29
CDX88656 Canola plasma membrane 44.03 45.16
GSMUA_Achr4P09430_001 Banana extracellular 38.99 45.06
Bra006785.1-P Field mustard extracellular, plasma membrane 43.9 45.03
KRH03081 Soybean extracellular, plasma membrane 42.89 44.63
Os02t0187400-01 Rice plasma membrane 38.49 43.53
TraesCS6A01G174100.1 Wheat extracellular, plasma membrane, vacuole 39.75 42.19
KXG29647 Sorghum extracellular, plasma membrane 39.62 41.83
TraesCS6B01G202700.1 Wheat extracellular, plasma membrane 39.37 41.79
TraesCS6D01G163200.1 Wheat extracellular, plasma membrane 39.25 41.66
TraesCS1A01G353200.1 Wheat extracellular, plasma membrane 39.75 41.52
TraesCS1B01G368600.1 Wheat extracellular, plasma membrane 39.62 41.39
Zm00001d015609_P002 Maize plasma membrane 39.5 41.26
TraesCS1D01G357000.1 Wheat extracellular, plasma membrane 39.25 41.0
EER90089 Sorghum extracellular, plasma membrane 38.99 40.74
Solyc12g014570.1.1 Tomato nucleus 37.23 39.41
HORVU1Hr1G080970.22 Barley extracellular, plasma membrane 39.12 38.3
Solyc07g065120.2.1 Tomato extracellular 36.1 38.11
CDX71386 Canola extracellular 9.06 38.1
CDY11832 Canola cytosol, peroxisome, plastid 5.91 30.72
Solyc06g069470.2.1 Tomato extracellular 10.94 22.25
Protein Annotations
Gene3D:3.20.20.190MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629
GO:GO:0008081GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
InterPro:GP_PDE_domInterPro:IPR017946InterPro:IPR030395UniProt:K4B4Q2PFAM:PF03009InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704PANTHER:PTHR43620PANTHER:PTHR43620:SF3SUPFAM:SSF51695SignalP:SignalP-noTMEnsemblPlantsGene:Solyc02g014530.2
EnsemblPlants:Solyc02g014530.2.1TMHMM:TMhelixUniParc:UPI0002768436SEG:seg::
Description
No Description!
Coordinates
chr2:+:16935024..16939718
Molecular Weight (calculated)
87538.8 Da
IEP (calculated)
6.020
GRAVY (calculated)
-0.047
Length
795 amino acids
Sequence
(BLAST)
001: MLLPFFGGLK IQDWKKMIKH VLLLCLMIHC TIADPKAVVP VPVPPVPVSV PPLPKHAWLT LHGDEPYVVA NGGFSGLYPP QTELAYSQSI IFGKGGTVLL
101: CDLHMSRDGH GFCLSQLNLQ NTTNAADAFP NRKKTYIVNG KELQGWFALD LTSNEMFDKL IVTQSIFSRT DLFDFLSPYP TDIYLEENRN ALLWINAEYA
201: TFYDQHKLSL LDHVKHIVET KKDITYISSP EIGFLKSMGP VVHRLKTKLM FKFPIDRNAV EPTTNEPYAS ILTKLPMIKT FATGIVVPRE FIWPVNKARY
301: LEPSTNLVAD AHKQGLEVFA YGFANDNFLP HNYSYDVQRE YLQFVDNSKF AVDGVVTDFP TSASTAIACL AGSKNASRKV PTLIISANGA NGEYPGSTDL
401: AYQKAVDDGA DIIDCSVQMT KDGVAFCLPS ADLIPTTTAS GPFMSRAVKV DSIQSSMGIF SFDFKWDEIL SLKPQMFSEF NGDLIRDPAR KNVGKFVTLS
501: DFLEFAKAKA VPGVLINIEN AVYLANKGLD IVAAVTTALS NATLDKQSTQ KVLIMSAESS VLDKFKDIPT YQKVLHIKKQ VGFVTNETAL EIKKHADAVY
601: LHKHSLYTQF RGEGFTLNST NLIECLHWAN VSVYAGTVLN EFQDIYMDFS SDPYSLIHNL IYYGADGIIT QYPGTANAYT RNLCTGNLES YRIPDINPGD
701: VITTSLDPKE VEEFKPPPPV HLETKDFVTP PLPPVAAIAK DDDKGSASSN NNNVNAPSSS SSPPEQAQTP STATAATINI VALLFSTILG LVSLL
Best Arabidopsis Sequence Match ( AT5G58050.1 )
(BLAST)
001: MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLRFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC
401: HDAADLSAST TARTTFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG KAKAVTGVLI NIQNAAYLAS
501: KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH
601: KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD
701: VIDPPLPPVA KLASNGTEGG PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA
Arabidopsis Description
GDPDL6Glycerophosphodiester phosphodiesterase GDPDL6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGT9]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.