Factsheet for Solyc06g069470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010411	Potato	extracellular, golgi	97.44	97.44
VIT_17s0000g07450.t01	Wine grape	extracellular, golgi	76.21	75.44
GSMUA_Achr6P34970_001	Banana	extracellular, plasma membrane	74.94	75.32
KRH03139	Soybean	extracellular, golgi	72.63	73.2
KRH56805	Soybean	nucleus	73.15	72.96
Zm00001d012677_P012	Maize	golgi	72.12	72.12
Bra009316.1-P	Field mustard	extracellular, vacuole	67.77	71.24
Os01t0763600-01	Rice	extracellular	71.1	71.1
CDX69980	Canola	extracellular, golgi, vacuole	67.52	70.97
CDX99041	Canola	extracellular	67.52	70.78
EES01511	Sorghum	extracellular, golgi	70.59	70.59
AT1G74210.1	Thale cress	extracellular	70.33	70.15
HORVU3Hr1G073870.1	Barley	extracellular, golgi	70.08	70.08
TraesCS3D01G299100.1	Wheat	extracellular, golgi	69.82	69.82
TraesCS3B01G333600.1	Wheat	extracellular, golgi	69.82	69.82
TraesCS3A01G302700.1	Wheat	extracellular, golgi	69.82	69.82
AT5G08030.2	Thale cress	golgi	68.54	69.25
CDX73068	Canola	extracellular	69.82	69.11
Bra003814.1-P	Field mustard	golgi	68.8	68.8
Bra015928.1-P	Field mustard	extracellular, golgi, vacuole	68.54	68.19
CDY11071	Canola	extracellular, golgi	67.77	67.77
CDX68196	Canola	golgi	68.03	67.0
Bra003813.1-P	Field mustard	cytosol	69.05	65.53
CDX68195	Canola	peroxisome	68.8	65.29
CDX96524	Canola	golgi, mitochondrion, peroxisome, plastid	68.8	64.05
CDX85815	Canola	mitochondrion	43.73	59.17
CDX85814	Canola	extracellular	27.62	55.1
Solyc02g014490.2.1	Tomato	unclear	20.72	11.22
Solyc02g014530.2.1	Tomato	unclear	22.25	10.94
Solyc12g014570.1.1	Tomato	nucleus	20.97	10.92
Solyc07g065120.2.1	Tomato	extracellular	20.72	10.76
Os01t0763700-01	Rice	plastid	0.0	0.0

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
UniProt:K4C8C0	PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF5
SUPFAM:SSF51695	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g069470.2	EnsemblPlants:Solyc06g069470.2.1	UniParc:UPI0002766979	SEG:seg

Description

No Description!

Coordinates

chr6:+:43221157..43226562

Molecular Weight (calculated)

45336.5 Da

IEP (calculated)

5.627

GRAVY (calculated)

-0.461

Length

391 amino acids

Sequence
(BLAST)

001: MDSPSVIPYI FLLLLVGCSA RPLYPLPGRR NDRNKQPLQT FRAYNIAHRG SNGEIPEETA AAYMRAIEEG TDFIETDILA SKDGALICFH DVILDDTTDI
101: ANHKEFADRK RTYDVQGVNT TGYFLVDFTL EELKLLRVKQ RYPFRDQQYN GEFSIITFEE FISIALDAHR VVGIYPEIKN PVLINQHVKW PGGKKFEDKF
201: VETLKKYGYK GSYMSKQWLK QPAFIQSFAP TSLIYISNQT DLPKIFLIDD TNTPTQDTNQ SYWEITADGY LDYIKDYVVG IGPWKDTIVP CSNNYLQTPS
301: DLIARAHARN LQVHPYTFRN ENQFVHFNFS EDPYNEYDYW INKMGVDGLF TDFTGSLHHY QEWTNPFASG EKEATRLLNK IELMLSKFKY T

Best Arabidopsis Sequence Match ( AT1G74210.1 )
(BLAST)

001: MILTRCLPLI WLSLLTVCAA GRTLHPLPVK GPKTVKLQLQ TSRPYNIAHR GSNGEIPEET TAAYLKAIEE GTDFIETDIL SSKDGVLICF HDCILDETTN
101: VASHKEFADR KRTYDVQGFN ITGFFTFDFT LKELKQLRIK QRYAFRDQQY NGMYPIITFE EFLTIARDAP RVVGIYPEIK NPVLMNQHVK WPGGKKFEDK
201: VVETLKKYGY GGSYLSKKWL KKPLFIQSFA PTSLVYISNL TDSPKVLLID DVTMPTQDTN QTYAEITSDA YFEYIKQYVV GIGPWKDTIV PVNNNYVLAP
301: TDLVKRAHAH NLQVHPYTYR NEHEFLHYNF SQDPYKEYDY WINEIGVDGL FTDFTGSLHN FQEWTSPLPD TSKSPRQLLS QIASLVLPYA KA

Arabidopsis Description

GDPD5GDPD5 [Source:UniProtKB/TrEMBL;Acc:A0A178W3R5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.