Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01511 | Sorghum | extracellular, golgi | 96.42 | 96.42 |
| TraesCS3D01G299100.1 | Wheat | extracellular, golgi | 86.7 | 86.7 |
| TraesCS3A01G302700.1 | Wheat | extracellular, golgi | 86.7 | 86.7 |
| HORVU3Hr1G073870.1 | Barley | extracellular, golgi | 86.7 | 86.7 |
| TraesCS3B01G333600.1 | Wheat | extracellular, golgi | 86.44 | 86.44 |
| Os01t0763600-01 | Rice | extracellular | 85.42 | 85.42 |
| GSMUA_Achr6P34970_001 | Banana | extracellular, plasma membrane | 72.38 | 72.75 |
| Solyc06g069470.2.1 | Tomato | extracellular | 72.12 | 72.12 |
| PGSC0003DMT400010411 | Potato | extracellular, golgi | 71.61 | 71.61 |
| KRH56805 | Soybean | nucleus | 71.36 | 71.17 |
| VIT_17s0000g07450.t01 | Wine grape | extracellular, golgi | 71.87 | 71.14 |
| KRH03139 | Soybean | extracellular, golgi | 70.33 | 70.88 |
| Bra009316.1-P | Field mustard | extracellular, vacuole | 67.26 | 70.7 |
| CDX69980 | Canola | extracellular, golgi, vacuole | 67.26 | 70.7 |
| CDX99041 | Canola | extracellular | 67.01 | 70.24 |
| AT5G08030.2 | Thale cress | golgi | 67.52 | 68.22 |
| Bra003814.1-P | Field mustard | golgi | 65.47 | 65.47 |
| CDY11071 | Canola | extracellular, golgi | 64.96 | 64.96 |
| AT1G74210.1 | Thale cress | extracellular | 64.96 | 64.8 |
| CDX73068 | Canola | extracellular | 65.22 | 64.56 |
| Bra015928.1-P | Field mustard | extracellular, golgi, vacuole | 64.45 | 64.12 |
| Zm00001d022067_P001 | Maize | extracellular | 60.87 | 63.98 |
| CDX68196 | Canola | golgi | 64.71 | 63.73 |
| Zm00001d033187_P001 | Maize | plastid | 67.26 | 63.22 |
| Bra003813.1-P | Field mustard | cytosol | 64.71 | 61.41 |
| CDX68195 | Canola | peroxisome | 64.45 | 61.16 |
| CDX96524 | Canola | golgi, mitochondrion, peroxisome, plastid | 64.19 | 59.76 |
| CDX85815 | Canola | mitochondrion | 41.69 | 56.4 |
| CDX85814 | Canola | extracellular | 26.85 | 53.57 |
| Zm00001d050917_P002 | Maize | plasma membrane | 23.79 | 12.35 |
| Zm00001d017036_P002 | Maize | plasma membrane | 23.53 | 11.92 |
| Zm00001d015609_P002 | Maize | plasma membrane | 23.02 | 11.83 |
| Zm00001d022153_P006 | Maize | extracellular, mitochondrion | 20.97 | 10.55 |
| Zm00001d052875_P001 | Maize | mitochondrion | 20.46 | 10.31 |
| Zm00001d031412_P001 | Maize | extracellular | 19.44 | 10.2 |
| Zm00001d025670_P001 | Maize | mitochondrion | 0.51 | 1.31 |
| Os01t0763700-01 | Rice | plastid | 0.26 | 0.66 |
Protein Annotations
| Gene3D:3.20.20.190 | MapMan:35.1 | ProteinID:AQL00258.1 | ProteinID:AQL00268.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006629 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:GP_PDE_dom |
| InterPro:IPR017946 | InterPro:IPR030395 | UniProt:K7VPS3 | PFAM:PF03009 | InterPro:PLC-like_Pdiesterase_TIM-brl | PFscan:PS51704 |
| PANTHER:PTHR43620 | PANTHER:PTHR43620:SF5 | SUPFAM:SSF51695 | SignalP:SignalP-noTM | UniParc:UPI000221AFB4 | EnsemblPlantsGene:Zm00001d012677 |
| EnsemblPlants:Zm00001d012677_P012 | EnsemblPlants:Zm00001d012677_T012 | SEG:seg | : | : | : |
Description
Glycerophosphodiester phosphodiesterase GDPD5
Coordinates
chr8:-:178448730..178457867
Molecular Weight (calculated)
45347.7 Da
IEP (calculated)
5.439
GRAVY (calculated)
-0.328
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPSLCCAPL FLLLLLHLAF ARPLFPLPSK TKNEEKKPIQ TFRPYNIAHR GSNGEIPEET AAAYMRAIEE GADFIESDIL ASKDGALICF HDVTLDDTTD
101: VAKRKEFANR RRTYEVEWFN VTGWFVVDFT LEELKTLRVK QRYSFRDQQY NGMFSIITFE EFISIALDAD RTVGIYPEIK DPVFINKHVK WADGKKFEDK
201: FVDTLLKYGY KGQYMSENWL KQPLFIQSFA PTSIVHVSDF IDSPKVFLID DISVRTQDTN QSYWEITSDD YLAYISKYVV GLGPWKDTIV PASGNYLMPP
301: SDLVARAHAH NLQVHPYTYR NENQFLHFNF FQDPYNEYDF WINTVGVDGL FTDFTGTLHR YQELTSPHRK DETANSLLVK ISQMISAYEG L
101: VAKRKEFANR RRTYEVEWFN VTGWFVVDFT LEELKTLRVK QRYSFRDQQY NGMFSIITFE EFISIALDAD RTVGIYPEIK DPVFINKHVK WADGKKFEDK
201: FVDTLLKYGY KGQYMSENWL KQPLFIQSFA PTSIVHVSDF IDSPKVFLID DISVRTQDTN QSYWEITSDD YLAYISKYVV GLGPWKDTIV PASGNYLMPP
301: SDLVARAHAH NLQVHPYTYR NENQFLHFNF FQDPYNEYDF WINTVGVDGL FTDFTGTLHR YQELTSPHRK DETANSLLVK ISQMISAYEG L
001: MAFKYLLPLL LLSLLVANCA SRPLYRLPSE AKHATKKPLQ TSRPYNLAHR GSNGELPEET APAYMRAIEE GADFIETDIL SSKDGVLICH HDVNLDDTTD
101: VADHKEFADR KRTYEVQGMN MTGFFTVDFT LKELKTLGAK QRYPFRDQQY NGKFPIITFD EYISIALDAP RVVGIYPEIK NPVFMNQQVK WADGKKFEDK
201: FVETLKKYGY KGSYLSEDWL KQPIFIQSFA ATSLVYISNM TDSPKLFLID DVTILTEDTN KTYAEITSDA YLDYIKPYVI GIGPWKDTIV PVNNNRLMTP
301: TDLVARAHSR NLQVHPYTYR NENQFLHLEF NQDPYLEYDY WLNKIGVDGL FTDFTGSLHN YQELKSPLPQ QQ
101: VADHKEFADR KRTYEVQGMN MTGFFTVDFT LKELKTLGAK QRYPFRDQQY NGKFPIITFD EYISIALDAP RVVGIYPEIK NPVFMNQQVK WADGKKFEDK
201: FVETLKKYGY KGSYLSEDWL KQPIFIQSFA ATSLVYISNM TDSPKLFLID DVTILTEDTN KTYAEITSDA YLDYIKPYVI GIGPWKDTIV PVNNNRLMTP
301: TDLVARAHSR NLQVHPYTYR NENQFLHLEF NQDPYLEYDY WLNKIGVDGL FTDFTGSLHN YQELKSPLPQ QQ
Arabidopsis Description
PLC-like phosphodiesterases superfamily protein [Source:TAIR;Acc:AT5G08030]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.